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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:48:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

fl_04B08_BG1 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD255078.1:73-93
GCGTGGCTCAGCGGCCGAGGATCAACTTCT73GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:18755612-18755632
TTTCTTACTGCCCCTTTAATTACAACTTCT18755612GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:19068620-19068640
TTTCTTACTGCCCCTTTAATTACAACTTCT19068620GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:18503515-18503535
TTTCTTACTGCCCCTTTAATTACAACTTCT18503515GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:18714941-18714961
TTTCTTACTGCCCCTTTAATTACAACTTCT18714941GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:18724253-18724273
TTTCTTACTGCCCCTTTAATTACAACTTCT18724253GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:19263540-19263560
TTTCTTACTGCCCCTTTAATTACAACTTCT19263540GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:18310820-18310840
TTTCTTACTGCCCCTTTAATTACAACTTCT18310820GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATATCAAAGGCCCGAGAGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATATCAAAGGCCCGAGAGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.181 | 0.173 | search_plus_done; http://172.18.8.135:50400/match?q=GATATCAAAGGCCCGAGAGTC&k=0&no_gap=0&offset=0&limit=50
0.202 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=GACTCTCGGGCCTTTGATATC&k=0&no_gap=0&offset=0&limit=42
0.202 | 0.000 | cgi_end;

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