GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-01-10 17:35:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR3AD69JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV544387.1:543-566
CTTCACCAACTCTTCGGATGTTCTCAGCTC543GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACGTTGTCAC
RR1CF62JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX752622.1:540-563
CTTCCCCAACTCTTCGGATGTTTTCGGCTC540GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACGTTGTCAC
RS2C850JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900515.1:550-573
CTTCGCCAACTCTTCGGATGTTTTCGGATC550GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACGTTGTCAC
TSA: Pachycladon cheesemanii 47716_1035_9938_5_41.Pachleaf mRNA sequence.
JP980362.1:408-431
CTTCACCAACTCTTCGAATGTTTTCAGCTC408GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACATTGTCAC
TSA: Pyrus x bretschneideri Unigene5950_XinShao mRNA sequence.
JR601198.1:485-508
CCTCGGCAATTCTTCGTATGTTTTCTGCAC485GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCGTGACGAACATTGTCAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH038N24, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC232560.1:60322-60345
CTTCACCAACTCTTCTAACGTTTTCAGCTC60322GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACATTGCACC
Prunus dulcis DNA, pseudomolecule Pd06.
AP019302.1:20104445-20104468
ACACACCAATTCTTCGTATGTTCTCTGCAC20104445GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGCCGAACATTGTCAC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:5728112-5728135
CTTCACCAACTCTTCTAACGTTTTCAGCTC5728112GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGTACGTTGTCAC
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:51275627-51275650
CTTCACCAACTCTTCTAATGTTTTCAGCTC51275627GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCTAACGTTGTCAC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:40995915-40995938
CTTCACCAACTCTTCTAATGTTTTCAGCTC40995915GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCTAACATTGTCAC
Camelina sativa cultivar CO46 chromosome 2.
CP131550.1:31109108-31109131
CTTCACCAACTCTTCGAATGTTTTCAGCTC31109108GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATATCGAACATTGTCAC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:19821634-19821657
ACCCACCAATTCTTCGTATGTTTTCTGCAC19821634GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACATTGTCAC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:25977512-25977535
ACCCACCAATTCTTCGTATGTTTTCTGCAC25977512GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACGTTGTCAC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:25985731-25985754
ACCCACCAATTCTTCGTATGTTTTCTGCAC25985731GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACGTTGTCAC
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:21912551-21912574
ACCCACCAATTCTTCGTATGTTTTCTGCAC21912551GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACATTGTCAC
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:28716279-28716302
ACCCACCAATTCTTCGTATGTTTTCTGCAC28716279GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACGTTGTCAC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:25327296-25327319
ACCCACCAATTCTTCGTATGTTTTCTGCAC25327296GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACGTTGTCAC
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:26243393-26243416
ACCCACCAATTCTTCGTATGTTTTCTGCAC26243393GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACGTTGTCAC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:36318250-36318273
CTTCACCAACTCTTCTAATGTTTTCAGCTC36318250GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCTAACGTTGTCAC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:5204769-5204792
CTTCACCAACTCTTCTAACGTTTTCAGCTC5204769GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACATTGCACC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:6485377-6485400
CTTCACCAACTCTTCTAACGTTTTCAGCTC6485377GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACATTGTCAC
Brassica rapa genome, scaffold: A06.
LR031569.1:46394929-46394952
CTTCACCAACTCTTCTAATGTTTTCAGCTC46394929GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACATTGTCAC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:6600643-6600666
CTTCACCAACTCTTCTAACGTTTTCAGCTC6600643GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACATTGTCAC
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:50010987-50011010
CTTCACCAACTCTTCTAATGTTTTCAGCTC50010987GATCTTCTGCTTTGAAACTAAGATCGCTGTTTAAACCATGTCGAACATTGTCAC
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:25652573-25652596
ACCCACCAATTCTTCGTATGTTTTCTGCAC25652573GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACGTTGTCAC
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:20713143-20713166
ACCCACCAATTCTTCGTATGTTTTCTGCAC20713143GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACATTGTCAC
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:24683619-24683642
ACCCACCAATTCTTCGTATGTTTTCTGCAC24683619GATCTTCTGCTTTGAAACTAAGATCACGATTTAGACCATGACGAACATTGTCAC
Erodium maritimum genome assembly, chromosome: 3.
OY997590.1:1428925-1428948
ACTCACCGACTCTTCGGATGTTCTCTGCAC1428925GATCTTCTGCTTTGAAACTAAGATCACGATTAAGGCCATGCCTGACATTGTCAC
Myrica gale genome assembly, chromosome: 19.
OZ005616.1:397468-397491
ACTCACCAATCCTTCGTATGTTTTCTGCAC397468GATCTTCTGCTTTGAAACTAAGATCACTGTTTAGACCATGCCGCACATTGTCAC
Myrica gale genome assembly, chromosome: 24.
OZ005621.1:379864-379887
ACTCACCAATCCTTCGTATGTTTTCTGCAC379864GATCTTCTGCTTTGAAACTAAGATCACTGTTTAGACCATGCCGCACATTGTCAC
PP_LEa0004D17f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0004D17f, mRNA sequence.
BU039901.1:398-421
GTGACAATGTTCGGCATGGTCTAAATCGTG398ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAGAACATACGAAGAATTGCTGAGG
010918AVBC032082PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC032082, mRNA sequence.
CN941907.1:365-388
GTGACAACGTTCGTCATGGTCTAAATCGTG365ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGCCGAGG
Mdfrt3050p02.y1 Mdfrt Malus domestica cDNA clone Mdfrt3050p02 5' similar to SW:KAP1_ARATH Q43295 ADENYLYLSULFATE KINASE 1, CHLOROPLAST PRECURSOR, mRNA sequence.
CO754514.1:208-231
GTGACAATGTTCGTCATGGTCTAAATCGTG208ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGCCGAGG
Brassica oleracea var. viridis mRNA, clone: KALE-017G19, 5' end sequence.
DK462211.1:600-623
GTGACAATGTTAGACATGGTTTAAACAGCG600ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
Brassica oleracea var. viridis mRNA, clone: KALE-017G19, 3' end sequence.
DK521821.1:238-261
GTGACAATGTTAGACATGGTTTAAACAGCG238ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
Brassica oleracea var. viridis mRNA, clone: KALE-063K17, 3' end sequence.
DK539484.1:220-243
GTGACAATGTTAGACATGGTTTAAACAGCG220ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
Mdlr7007E10.g1 Apple_EST_Mdlr Malus domestica cDNA similar to ref|NP_179082.1| adenosine phosphosulfate kinase -related [Arabidopsis thaliana] sp|Q43295|KAP1_ARATH Adenylylsulfate kinase 1, chloroplas
DR996436.1:431-454
GTGACAATGTTCGTCATGGTCTAAATCGTG431ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGCCGAGG
76ETGS72_UP_004_C06_11MAY2005_044 76ETGS72 Brassica napus cDNA 5', mRNA sequence.
EE449663.1:141-164
GTGACAACGTTAGACATGGTTTAAACAGCG141ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
EST8095 11-19 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B444G031, mRNA sequence.
EL630587.1:445-468
GTGACAATGTTAGACATGGTTTAAACAGCG445ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
BNARO1GH_T3_021_C10_23NOV2006_076 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES901322.1:585-608
GTGACAATGTTAGACATGGTTTAAACAGCG585ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
BNSCS3CT_UP_065_B10_05MAY2007_078 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV041673.1:601-624
GTGACAATGTTAGACATGGTTTAAACAGCG601ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
RR3AD69TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV548770.1:520-543
GTGACAACGTTCGACATGGTTTAAACAGCG520ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAGAACATCCGAAGAGTTGGTGAAG
RR1CF62TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748770.1:461-484
GTGACAACGTTCGACATGGTTTAAACAGCG461ATCTTAGTTTCAAAGCAGAAGATCGAGCCGAAAACATCCGAAGAGTTGGCGAAG
RS2C850TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896612.1:327-350
GTGACAACGTTCGACATGGTTTAAACAGCG327ATCTTAGTTTCAAAGCAGAAGATCGATCCGAAAACATCCGAAGAGTTGGCGAAG
PPN054C06-T7 PPN Prunus persica cDNA clone PPN054C06, mRNA sequence.
FC864097.1:487-510
GTGACAATGTTCGGCATGGTCTAAATCGTG487ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAGAACATACGAAGAATTGCTGAGG
MMN2_662 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar to adenylylsulfate kinase, putative, mRNA sequence.
GR726046.1:592-615
GTGANCACGTTAGACATGGTTTAAACAGCG592ATCTTAGTTTCAAAGCAGAAGATCGAGCTG
TSA: Allium fistulosum mRNA, contig: AFU_06013.
FX559738.1:736-759
GTGATAATGTAAGACATGGGCTAAACCGAG736ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAATATTCGGAGAGTTGGAGAAG
TSA: Pachycladon fastigiatum 8111_1029_13580_7_41.Pafaleaf mRNA sequence.
JR028059.1:609-632
GTGACAATGTTCGACATGGTTTAAACAGCG609ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTCGAAGAGTTGGTGAAG
TSA: Allium cepa CUDHLF2_5515 mRNA sequence.
JR848333.1:201-224
GTGATAATGTAAGGCATGGGCTAAACCGAG201ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAATATTCGGAGAGTTGGAGAAG
PP_LBa0055-G12.F PP_LBa Prunus persica genomic 5', genomic survey sequence.
FI956233.1:792-815
GTGACAATGTTCGGCATGGTCTAAATCGTG792ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAGAACATACGAAGAATTGGTGGGT
BS_LBa005A09.F BS_LBa Boechera stricta genomic 5', genomic survey sequence.
KS425735.1:47-70
GTGACAATGTTCGACATGGTTTAAACAGCG47ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTCGAAGAGTTGGTGAAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
AC189526.2:65052-65075
GGTGCAATGTTCGACATGGTTTAAACAGCG65052ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACGTTAGAAGAGTTGGTGAAG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:62652851-62652874
GTGACAATGTTCGACATGGTTTAAACAGCG62652851ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACGTTAGAAGAGTTGGTGAAG
Ziziphus jujuba cultivar Dongzao chromosome 7.
CP134457.1:13899133-13899156
GTGACAATATTCGACATGGTCTAAACAGTG13899133ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGTAGGATTGGTATGT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:15537682-15537705
GTGACAATGTTCGTCATGGTCTAAATCGTG15537682ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:16243014-16243037
GTGACAATGTTCGTCATGGTCTAAATCGTG16243014ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:16399473-16399496
GTGACAATGTTCGTCATGGTCTAAATCGTG16399473ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:27806148-27806171
GTGACAACGTTCGTCATGGTCTAAATCGTG27806148ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:15647767-15647790
GTGACAATGTTCGTCATGGTCTAAATCGTG15647767ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:24683537-24683560
GTGACAACGTTCGTCATGGTCTAAATCGTG24683537ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:38356101-38356124
GTGACAATGTTAGACATGGTTTAAACAGCG38356101ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:38743417-38743440
GTGACAATGTTAGACATGGTTTAAACAGCG38743417ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:15994142-15994165
GTGACAATGTTCGTCATGGTCTAAATCGTG15994142ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:27225821-27225844
GTGACAACGTTCGTCATGGTCTAAATCGTG27225821ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus domestica genome assembly, chromosome: 2.
OU696678.1:16262007-16262030
GTGACAATGTTCGTCATGGTCTAAATCGTG16262007ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus domestica genome assembly, chromosome: 15.
OU696691.1:27825346-27825369
GTGACAACGTTCGTCATGGTCTAAACCGTG27825346ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus domestica genome assembly, chromosome: 2.
OU744543.1:16266440-16266463
GTGACAATGTTCGTCATGGTCTAAATCGTG16266440ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus domestica genome assembly, chromosome: 15.
OU744556.1:27675019-27675042
GTGACAACGTTCGTCATGGTCTAAATCGTG27675019ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus domestica genome assembly, chromosome: 2.
OU744954.1:15897654-15897677
GTGACAATGTTCGTCATGGTCTAAATCGTG15897654ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus domestica genome assembly, chromosome: 15.
OU744967.1:27814549-27814572
GTGACAACGTTCGTCATGGTCTAAACCGTG27814549ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGATCTAATGATTTTG
Malus domestica genome assembly, chromosome: 2.
OU744992.1:16343130-16343153
GTGACAATGTTCGTCATGGTCTAAATCGTG16343130ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Malus domestica genome assembly, chromosome: 15.
OU745005.1:27520611-27520634
GTGACAACGTTCGTCATGGTCTAAATCGTG27520611ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Cochlearia excelsa genome assembly, chromosome: 4.
OY748330.1:423568-423591
GTGACAATGTTCGACATGGTTTAAACAGTG423568ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTAGAAGAGTTGGTGAAG
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:12181410-12181433
GTGACAATGTTCGTCACGGTCTAAATCGTG12181410ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGAATTGGTGGGT
Cardamine chenopodiifolia genome assembly, chromosome: 8.
OZ000466.1:597814-597837
GTGACAATGTTCGACATGGTTTAAACAGTG597814ATCTTAGTTTCAAAGCAGAAGATCGAGCTGAAAACATTCGAAGAGTTGGCCAAG
Myrica gale genome assembly, chromosome: 22.
OZ005619.1:22935650-22935673
GTGACAATGTGCGGCATGGTCTAAACAGTG22935650ATCTTAGTTTCAAAGCAGAAGATCGTGCAGAAAACATACGAAGGATTGGTGAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATCTTCTGCTTTGAAACTAAGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCTTCTGCTTTGAAACTAAGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.284 | 0.276 | search_plus_done; http://172.18.8.135:50400/match?q=GATCTTCTGCTTTGAAACTAAGAT&k=0&no_gap=0&offset=0&limit=50
1.126 | 0.842 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTTAGTTTCAAAGCAGAAGATC&k=0&no_gap=0&offset=0&limit=20
1.156 | 0.030 | cgi_end;

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