GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 16:43:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB032C14F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB032C14, genomic survey sequence.
DX034359.1:429-448
GAAAAGACCAGGAAGATAGGCGGAAAGGAA429GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
KBrB130H03R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB130H03, genomic survey sequence.
ED537270.1:422-441
GAAAAGACCAGGAAGATAGGCGGAAAGGAA422GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH095B11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC241164.1:63368-63387
GAAAAGACCAGGAAGATAGGCGGAAAGGAA63368GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:9981746-9981765
GAAAAGACCAGGAAGATAGGCGGAAAGGAA9981746GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica rapa genome, scaffold: A03.
LR031572.1:9815699-9815718
GAAAAGACCAGGAAGATAGGCGGAAAGGAA9815699GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:9938327-9938346
GAAAAGACCAGGAAGATAGGCGGAAAGGAA9938327GATGAAGCCAAGGTGGGTAAATATAATACCACTACACGTGTCGTAATGAC
63JKCOT5_T3_020_B02_22JAN2005_014 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY021570.1:242-261
GTCATTACGACACGTGTAGTGGTATTATAT242TTACCCACCTTGGCTTCATCTTCCTTTCCGCCTATCTTCCTGGTCTTTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB032C14, complete sequence.
AC189306.2:104504-104523
GTCATTACGACACGTGTAGTGGTATTATAT104504TTACCCACCTTGGCTTCATCTTCCTTTCCGCCTATCTTCCTGGTCTTTTC
Brassica napus microsatellite Y5F115-1 sequence.
JX131202.1:1-20
1TTACCCACCTTGGCTTCATCTTCCTTTTCGCCTATCTTCCTGGTCTTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGAAGCCAAGGTGGGTAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGAAGCCAAGGTGGGTAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.139 | 0.130 | search_plus_done; http://172.18.8.135:50400/match?q=GATGAAGCCAAGGTGGGTAA&k=0&no_gap=0&offset=0&limit=50
0.215 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=TTACCCACCTTGGCTTCATC&k=0&no_gap=0&offset=0&limit=44
0.218 | 0.002 | cgi_end;

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