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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 21:27:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Chionomys nivalis genome assembly, chromosome: 7.
OX465455.1:69703081-69703100
GTAGAATCTTGGTACCAGCTGCCTCTGGTC69703081GATGCCTTTGCTCTCAGCTCTGCTCTGGGGGTTATGGTTTCCACTTGCCT
Telmatherina bonti genome assembly, chromosome: 3.
OW121823.1:16642061-16642080
GAACAGTTTGGAGTCTCCAGAGAAAAGCAG16642061GATGCCTTTGCTCTCAGCTCGCAGCAGAAGTAATTTCTTCCATTTTTTTT
Sprattus sprattus genome assembly, chromosome: 1.
OY735285.1:69420970-69420989
GCTACATGTGGAAAATCACAGCGCGTCGTG69420970GATGCCTTTGCTCTCAGCTCCACAATTGGCAAACATACATGGTAAACAGT
GA__Ed0025G03r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0025G03r, mRNA sequence.
BQ409900.1:275-294
AGACCAGAACCACCAAATGATCCCTTTTGG275GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
GA__Ed0036H06r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036H06r, mRNA sequence.
BQ411132.1:284-303
AGACCAGAACCACCAAATGATCCCTTTTGT284GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
GA__Ed0067E10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0067E10r, mRNA sequence.
BQ413016.1:278-297
AGACCAGAACCACCAAATGATCCCTTTTGT278GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
GA__Ed0088D05r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0088D05r, mRNA sequence.
BQ414571.1:280-299
AGACCAGAACCACCAAATGATCCCTTTTGT280GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
GA__Ed0101E08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0101E08r, mRNA sequence.
BQ415643.1:275-294
AGACCAGAACCACCAAATGATCCCTTTTGT275GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
pAR0083 pAR Gossypium hirsutum cDNA 5', mRNA sequence.
CA992697.1:260-279
AGACCAGAACCACCAAATGATCCCTTTTGT260GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
pAR10C11 pAR Gossypium hirsutum cDNA 5', mRNA sequence.
CA993763.1:279-298
AGACCAGAACCACCAAATGATCCCTTTTGT279GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
GA__Ea0003N21f Gate Gossypium arboreum cDNA clone Gate3CG11 5', mRNA sequence.
CK640567.1:283-302
AGACCAGAACCACCAAATGATCCCTTTTGT283GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
G.h.fbr-sw00958 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO491568.1:314-333
AGACCAGAACCACCAAATGATCCCTTTTGT314GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
G.h.fbr-sw07547 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO498157.1:320-339
AGACCAGAACCACCAAATGATCCCTTTTGT320GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
COT_CE_C07 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_101396) expressed protein; protein id: At1g15270.1, mRNA sequence.
DT046901.1:269-288
AGACCAGAACCACCAAATGATCCCTTTTGT269GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
COT_DJ_G08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_101396) expressed protein; protein id: At1g15270.1, mRNA sequence.
DT049186.1:264-283
AGACCAGAACCACCAAATGATCCCTTTTGT264GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
COT_DP_A04 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_101396) expressed protein; protein id: At1g15270.1, mRNA sequence.
DT049612.1:261-280
AAGACCAGAACCACCAAATGATCCCTTTGT261GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
COT_DQ_E01 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_101396) expressed protein; protein id: At1g15270.1, mRNA sequence.
DT049721.1:261-280
AGACCAGAACCACCAAATGATCCCTTTTGT261GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
GH_ON33P04.f GH_ON Gossypium hirsutum cDNA clone GH_ON33P04 5', mRNA sequence.
DT457047.1:253-272
AGACCAGAACCACCAAATGATCCCTTTTGT253GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
GH_CHX20K16.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX20K16 5', mRNA sequence.
DT467600.1:280-299
AGACCAGAACCACCAAATGATCCCTTTTGT280GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
UFL_200_51 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES810446.1:372-391
AGACCAGAACCACCAAATGATCCCTTTTGT372GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTCT
rayctn0_0096_G06.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO096589.1:261-280
AGACCAGAACCACCAAATGATCCCTTTTGT261GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
rcrycc0_0038_E09.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO109455.1:263-282
AGACCAGAACCACCAAATGATCCCTTTTGT263GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
B06_51579.18.S1108232113.LDYN1-6930.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ111865.1:260-279
AGACCAGAACCACCAAATGATCCCTTTTGT260GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
B11_51698.23.S1108262381.LDYN1-9431.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ112399.1:260-279
AGACCAGAACCACCAAATGATCCCTTTTGT260GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
C03_51522.27.S1108203370.LDYN1-4347.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ112741.1:260-279
AGACCAGAACCACCAAATGATCCCTTTTGT260GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
C08_51711.32.S1108263638.LDYN1-10688.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ113319.1:261-280
AGACCAGAACCACCAAATGATCCCTTTTGT261GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
C09_51491.33.S1108193692.LDYN1-2145.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ113356.1:260-279
AGACCAGAACCACCAAATGATCCCTTTTGT260GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
F04_51543.64.S1108223311.LDYN1-5728.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ116500.1:262-281
AGACCAGAACCACCAAATGATCCCTTTTGT262GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
G03_51678.75.S1108253370.LDYN1-8907.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ117627.1:261-280
AGACCAGAACCACCAAATGATCCCTTTTGT261GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
H06_51493.90.S1108193941.LDYN1-2394.M13-R.ab1 Gossypium hirsutum L. cotton leaves cDNA library Gossypium hirsutum cDNA 3', mRNA sequence.
JZ119085.1:261-280
AGACCAGAACCACCAAATGATCCCTTTTGT261GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTTCTCTTCTTCTTTCTTTTT
Gossypioides kirkii chromosome KI_09.
CP032251.1:24960413-24960432
AGACCAGCACCACCAAATGATCCCTTTTGT24960413GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTGCACATCAAAAAGAAAATT
Gossypium raimondii isolate D5-4 chromosome D5_10.
CP032562.1:62682564-62682583
AGACCAGAACCACCAAATGATCCCTTTTGT62682564GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTGCACATCAAAAAGAAAAAT
Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:62550252-62550271
AGACCAGAACCACCAAATGATCCCTTTTGT62550252GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTACACATCAAAAAGAAAAAT
Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:70095560-70095579
AGACCAGAACCACCAAATGATCCCTTTTGT70095560GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTGCACATCAAAAAGAAAAAT
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:101424122-101424141
AGACCAGAACCACCAAATGATCCCTTTTGT101424122GATGCCTTTGCTCTCAGCTCTCTAAGGGCCTGCACATCAAAAAGAAAAAT
Epistrophe eligans genome assembly, chromosome: 4.
OX596031.1:3298740-3298759
GACCGGTCATAGTATAGAATGACCACTCTT3298740GATGCCTTTGCTCTCAGCTCAGTGGTCCTAGAAGCTAGAACTAAGTCAAA
Sequence 5486 from patent US 7557201.
GP474489.1:207-226
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA207GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 13994 from patent US 7557201.
GP482997.1:80-99
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA80GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 17301 from patent US 7557201.
GP486304.1:225-244
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA225GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 22536 from patent US 7557201.
GP491539.1:201-220
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA201GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 23311 from patent US 7557201.
GP492314.1:211-230
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA211GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 3546 from patent US 9976157.
MI669540.1:363-382
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA363GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 3556 from patent US 9976157.
MI669550.1:273-292
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA273GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 3546 from patent US 10501750.
MO571024.1:363-382
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA363GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 3556 from patent US 10501750.
MO571034.1:273-292
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA273GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 1613 from patent US 10858403.
MX113083.1:232-251
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 3546 from patent US 11293032.
OO007737.1:363-382
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA363GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 3556 from patent US 11293032.
OO007747.1:273-292
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA273GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 1613 from patent US 11421004.
OO462446.1:232-251
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Sequence 1613 from patent US 11472853.
OO764566.1:232-251
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
BNLGHi5506 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW187456.1:17-36
AGAGAAGGCCCTTAGA17GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Ea0034H19f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0034H19f, mRNA sequence.
BE054152.2:196-215
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA196GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Eb0018B09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0018B09f, mRNA sequence.
BF273459.1:200-219
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA200GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Eb0021D05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0021D05f, mRNA sequence.
BF274496.1:200-219
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA200GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGGTAGGGTGTCCT
GA__Eb0022A12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0022A12f, mRNA sequence.
BF274781.2:23-42
AGAAGAAGAGAAGGCCCTTTTA23GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGGCT
GA__Eb0022O12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0022O12f, mRNA sequence.
BF275027.1:192-211
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA192GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Eb0026I16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0026I16f, mRNA sequence.
BF277099.2:207-226
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA207GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Eb0032A12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032A12f, mRNA sequence.
BF278183.2:197-216
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA197GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Eb0036K20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0036K20f, mRNA sequence.
BF279017.1:154-173
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA154GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Ea0011E13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0011E13f, mRNA sequence.
BG440996.1:215-234
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA215GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Ea0021D22f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0021D22f, mRNA sequence.
BG443589.1:216-235
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA216GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Ea0023O09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0023O09f, mRNA sequence.
BG444292.1:173-192
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA173GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Eb0039K20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0039K20f, mRNA sequence.
BG446883.1:197-216
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA197GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
GA__Eb0040D12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040D12f, mRNA sequence.
BG447018.1:210-229
AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA210GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:17055979-17055998
ATTTTTCTTTTTGATGTGCAGGCCCTTAGA17055979GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT
Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:10548849-10548868
ATTTTTCTTTTTGATGTGTAGGCCCTTAGA10548849GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGCCTTTGCTCTCAGCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGCCTTTGCTCTCAGCTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.343 | 1.334 | search_plus_done; http://172.18.8.135:50400/match?q=GATGCCTTTGCTCTCAGCTC&k=0&no_gap=0&offset=0&limit=50
2.596 | 1.253 | search_minus_done; http://172.18.8.135:50400/match?q=GAGCTGAGAGCAAAGGCATC&k=0&no_gap=0&offset=0&limit=14
2.615 | 0.019 | cgi_end;

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