GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 03:18:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acomys kempi genome assembly, chromosome: 2.
OU015356.1:56174270-56174289
ACGGTGCATGTAAATCCCAAAAGAACTGAA56174270GATGCTTTGCCTATTGCTCAGTGAACAGCAGCCCAGCCCTCCCCTTAAGC
TSA: Pyrus pyrifolia mRNA, contig: contig_13055revcomp.
FX410614.1:447-466
GTTACTTTTATCTTCCTTCACATTTGAAAA447GATGCTTTGCCTATTGCTCAATACTACCAAATGACTATGAATTC
TSA: Pyrus pyrifolia mRNA, contig: contig_13054revcomp.
FX411217.1:670-689
GTTACTTTTATCTTCCTTCACATTTGAAAA670GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
TSA: Pyrus communis mRNA, contig: lc20236.
FX628749.1:315-334
GTTGCTTTTATCTTCCTTCACATTTGAAAA315GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCAGGGAG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:662368-662387
GCTATCACTCTCTCCCTTCAAACCTTAAAA662368GATGCTTTGCCTATTGCTCAATACTTCCCAATGACTACGAATTTAGTGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2491242-2491261
GTTACTTTTATCTTCCTTCACATTTGAAAA2491242GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2503504-2503523
GTTACTTTTATCTTCCTTCACATTTGAAAA2503504GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:744780-744799
GCTATCACTCTCTCCCTTCAAACCTTAAAA744780GATGCTTTGCCTATTGCTCAATACTTCCCAATGACTACGAATTTAGTGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2457384-2457403
GTTACTTTTATCTTCCTTCACATTTGAAAA2457384GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2483944-2483963
GTTACTTTTATCTTCCTTCACATTTGAAAA2483944GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2501667-2501686
GTTACTTTTATCTTCCTTCACATTTGAAAA2501667GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2515294-2515313
GTTACTTTTATCTTCCTTCACATTTGAAAA2515294GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2524438-2524457
GTTACTTTTATCTTCCTTCACATTTGAAAA2524438GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2580033-2580052
GTTACTTTTATCTTCCTTCACATTTGAAAA2580033GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141955.1:36290480-36290499
CCTACTTTTATCTTCTTTCACATTTGAAAA36290480GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2548363-2548382
GTTACTTTGATCTTCCTTCACATTTGAAAA2548363GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2583236-2583255
GTTACTTTTATCTTCCTTCACATTTGAAAA2583236GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2605525-2605544
GTTACTTTTATCTTCCTTCACATTTGAAAA2605525GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAT
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2614667-2614686
GTTACTTTTATCTTCCTTCACATTTGAAAA2614667GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2664032-2664051
GTTACTTTTATCTTCCTTCACATTTGAAAA2664032GATGCTTTGCCTATTGCTCAATATTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141972.1:37440775-37440794
CCTACTTTTATCTTCCTTCACATTTGAAAA37440775GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2646365-2646384
GTTACTTTTATCTTCCTTCACATTTGAAAA2646365GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2662428-2662447
GTTACTTTTATCTTCCTTCACATTTGAAAA2662428GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2488818-2488837
GTTACTTTTATCTTCCTTCACATTTGAAAA2488818GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAT
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2500728-2500747
GTTACTTTTATCTTCCTTCACATTTGAAAA2500728GATGCTTTGCCTATTGCTCAATACTTCCAAATGACCATGAATTCGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2530561-2530580
GTTACTTTTATCTTCCTTCACATTTGAAAA2530561GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2544331-2544350
GTTACTTTTATCTTCCTTCACATTTGAAAA2544331GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2573336-2573355
GTTACTTTTATCTTCCTTCACATTTGAAAA2573336GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2515247-2515266
GTTACTTTTATCTTCCTTCACATTTGAAAA2515247GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2537547-2537566
GTTACTTTTATCTTCCTTCAAATTTGAAAA2537547GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2550560-2550579
GTTACTTTTATCTTCCTTCACATTTGAAAA2550560GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2562736-2562755
GCTACTTTTATCTTCCTTCACATTTGAAAA2562736GATGCTTTGCCTATTGCTCAATATTTCCAAATGACTATGAATTCGGGGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2585898-2585917
GTTACTTTTATCTTCCTTCACATTTGAAAA2585898GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus baccata genotype MAL0419 FB_Mr5-like protein gene, complete cds.
KT013244.1:1268-1287
CCTACTTTTATCTTCCTTCACATTTGAAAA1268GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus x robusta genotype PI589278 FB_Mr5-like protein gene, complete cds.
KT013245.1:1268-1287
CCTACTTTTATCTTCCTTCACATTTGAAAA1268GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus x robusta genotype MAL0205 FB_Mr5-like protein pseudogene, complete sequence.
KT013246.1:1265-1284
GTTACTTTTATCTTCCTTCACATTTGAAAA1265GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus x robusta genotype PI 588904 FB_Mr5-like protein pseudogene, complete sequence.
KT013247.1:1268-1287
CCTACTTTTATCTTCCTTCACATTTGAAAA1268GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus x robusta genotype PI589003 FB_Mr5-like protein gene, complete cds.
KT013248.1:1268-1287
CCTACTTTTATCTTCCTTCACATTTGAAAA1268GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus x robusta genotype MAL0207 FB_Mr5-like protein pseudogene, complete sequence.
KT013249.1:1269-1288
CCTACTTTTATCTTCCTTCACATTTGAAAA1269GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus prunifolia genotype MAL0108 FB_Mr5-like protein mRNA, complete cds.
KT013250.1:1268-1287
CCTACTTTTATCTTCCTTCACATTTGAAAA1268GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus prunifolia genotype MAL0109 FB_Mr5-like protein mRNA, complete cds.
KT013251.1:1268-1287
CCTACTTTTATCTTCCTTCACATTTGAAAA1268GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus prunifolia genotype MAL0109 FB_Mr5-like protein pseudogene mRNA, complete sequence.
KT013252.1:1268-1287
CCTACTTTTATCTTCCTTCACATTTGAAAA1268GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus prunifolia genotype MAL0322 FB_Mr5-like protein pseudogene mRNA, complete sequence.
KT013253.1:1269-1288
CCTACTTTTATCTTCCTTCACATTTGAAAA1269GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAAGAG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2606427-2606446
GTTACTTTTATCTTCCTTCACATTTGAAAA2606427GATGCTTTGCCTATTGCTCAATAATTCCAAATGACTATGAATTCGGGGAG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2622811-2622830
GTTACTTTTATCTTCCTTCACATTTGAAAA2622811GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2641619-2641638
GTTACTTTTATCTTCCTTCACATTTGAAAA2641619GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2672267-2672286
GTTACTTTTATCTTCCTTCACATTTGAAAA2672267GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2600034-2600053
GTTACTTTTATCTTCCTTCACATTTGAAAA2600034GATGCTTTGCCTATTGCTCAATAATTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2621113-2621132
GTTACTTTTATCTTCCTTCACATTTGAAAA2621113GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2634267-2634286
GTTACTTTTATCTTCCTTCACATTTGAAAA2634267GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2663449-2663468
GTTACTTTTATCTTCCTTCACATTTGAAAA2663449GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2652983-2653002
GTTACTTTTATCTTCCTTCACATTTGAAAA2652983GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAT
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2667603-2667622
GTTACTTTTATCTTCCTTCACATTTGAAAA2667603GATGCTTTGCCTATTGCTCAATATTTCCAAATGACTATGAATTCGAGGAG
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2703519-2703538
GTTACTTTTATCTTCCTTCACATTTGAAAA2703519GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2717291-2717310
GTTACTTTTATCTTCCTTCACATTTGAAAA2717291GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2746309-2746328
GTTACTTTTATCTTCCTTCACATTTGAAAA2746309GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2692935-2692954
GTTACTTTTATCTTCCTTCACATTTGAAAA2692935GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAT
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2707555-2707574
GTTACTTTTATCTTCCTTCACATTTGAAAA2707555GATGCTTTGCCTATTGCTCAATATTTCCAAATGACTATGAATTCGAGGAG
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2743471-2743490
GTTACTTTTATCTTCCTTCACATTTGAAAA2743471GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2757242-2757261
GTTACTTTTATCTTCCTTCACATTTGAAAA2757242GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2786261-2786280
GTTACTTTTATCTTCCTTCACATTTGAAAA2786261GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2678532-2678551
GTTACTTTTATCTTCCTTCACATTTGAAAA2678532GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2704871-2704890
GTTACTTTTATCTTCCTTCACATTTGAAAA2704871GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2723681-2723700
GTTACTTTTATCTTCCTTCACATTTGAAAA2723681GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGGGGAT
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2737794-2737813
GTTACTTTTATCTTCCTTCACATTTGAAAA2737794GATGCTTTGCCTATTGCTCAATATTTCCAAATGACTATGAATTCGGGGAG
Trifolium subterraneum genome assembly, chromosome: 6.
OX637466.1:6482754-6482773
GTTATCAACACCTTCCTTCTCATTTGAAAA6482754GATGCTTTGCCTATTGCTCAATTTTTCCGAAGGGTTATCTCTTTGATAGG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:40498645-40498664
CCTACTTTTATCTTCCTTCACATTTGAAAA40498645GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGAATAG
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:679939-679958
GCTATCACTCTCTCCCTTCAAACCTTAAAA679939GATGCTTTGCCTATTGCTCAATACTTCCCAATGACTACGAATTTAGTGAG
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:783118-783137
GCTATCACTCTCTCCCTTCAAACCTTAAAA783118GATGCTTTGCCTATTGCTCAATACTTCCCAATGACTACGAGTTTAGTGAG
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:40223967-40223986
CCTACTTCTATCTTCCTTCACATTTGAAAA40223967GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAGTTCGAAGAG
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:40235444-40235463
CCTACTTCTATCTTCCTTCACATTTGAAAA40235444GATGCTTTGCCTATTGCTCAATACTTCCGAATGACTATGAGTTCGAAGAG
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:27076679-27076698
CCTACTTTTATCTTCCTTCACATTTGAAAA27076679GATGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTCGAAGAG
Potentilla sterilis genome assembly, chromosome: 10.
OY821763.1:13660449-13660468
GATTGAGTAATCTCCCTTCAACTTTGAAGA13660449GATGCTTTGCCTATTGCTCAATACTACCCAATGACTATGAATTTGGGAAA
Potentilla sterilis genome assembly, chromosome: 13.
OY821766.1:11290006-11290025
GTTATCATTATCTCCCTTCAACTTTGAAGA11290006GATGCTTTGCCTATTGCTCAATACTTCCCAATGACTATGAATTTCGGAAA
Potentilla sterilis genome assembly, chromosome: 13.
OY821766.1:11926809-11926828
GCTATCACTATCTCTCTTCAAATTAGTAAA11926809GATGCTTTGCCTATTGCTCAATACTTCCAACTGACTATGAGTTTGGGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGCTTTGCCTATTGCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGCTTTGCCTATTGCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.157 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=GATGCTTTGCCTATTGCTCA&k=0&no_gap=0&offset=0&limit=50
0.224 | 0.067 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGCAATAGGCAAAGCATC&k=0&no_gap=0&offset=0&limit=0
0.224 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).