GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 22:48:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens DNA, chromosome X, nearly complete genome.
AP023483.1:20773501-20773520
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG20773501GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Human DNA sequence from clone RP11-52E20 on chromosome X.
BX088723.4:63468-63487
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG63468GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Homo sapiens isolate CHM13 chromosome X.
CP068255.2:20754431-20754450
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG20754431GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Homo sapiens isolate NA24385 chromosome X.
CP086568.2:20773509-20773528
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG20773509GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Homo sapiens isolate NA24385 chromosome X.
CP139511.1:20769455-20769474
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG20769455GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Heterocephalus glaber genome assembly, chromosome: 13.
OX090921.1:7180749-7180768
GAAAAGGTGGAAGCACCCTAAAGGTTTGTT7180749GATGGAAGAATGAATAAACAAAATACAACATAGATAGACAATAGAATATG
Heterocephalus glaber genome assembly, chromosome: 13.
OX090953.1:39064385-39064404
GAAAAGGTGGAAGCACCCTAAAGGTTTGTT39064385GATGGAAGAATGAATAAACAAAATACAACATAGATAGACAATAGAATATG
Felis catus Senzu DNA, chromosome: A2, American Shorthair breed.
AP023153.1:159722819-159722838
CAAGAGGTGGCAATAAAGCCAGTGTCCGTT159722819GATGGAAGAATGAATAAACAGAATGTGGTCTATCCATACAATGAATATCA
Felis catus Senzu DNA, chromosome: B3, American Shorthair breed.
AP023157.1:76930833-76930852
TCTGTAGGCAATGGAAGCCACCCAATAATA76930833GATGGAAGAATGAATAAACAGCACTGTTCCTGGTTTTATCGTACAGTGTA
Capricornis sumatraensis isolate serow.1 chromosome 10.
CP135636.1:17735361-17735380
CAAAAGGTGGAGGCGACCCAAGTATCCACT17735361GATGGAAGAATGAATAAACAAAATGGGGCACCTACGTCCAACGAAAATCA
Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:432805288-432805307
CAGCAATACCAGGTTGCCTACAGAGAGACT432805288GATGGAAGAATGAATAAACAAAAAAAGACAAAGAACTATTATAATAGCAG
Sarcophilus harrisii genome assembly, chromosome: 3.
LR735556.1:36522161-36522180
TAATACAAAGCTCCAATCTAAGGAGGTAAG36522161GATGGAAGAATGAATAAACAATAACAGGTGAAGGGATGTCCAAGATGGAA
Sarcophilus harrisii genome assembly, chromosome: 4.
LR735557.1:158099997-158100016
ATAAAGAGTAAATTATGAATAATTTTGATG158099997GATGGAAGAATGAATAAACAAAACACTGGAGATTACTCTGAGGCCATCCA
Sarcophilus harrisii genome assembly, chromosome: 4.
LR735557.1:158156096-158156115
AGAGTAAATTATGAATAATTTTGATTGATG158156096GATGGAAGAATGAATAAACAAAACACTGGAGATTACTCTGAGGCCATCCA
Sarcophilus harrisii genome assembly, chromosome: 4.
LR735557.1:158200303-158200322
ATAAAGAGTAAATTATGAATAATTTTGATG158200303GATGGAAGAATGAATAAACAAAACACTGGAGATTACTCTGAGGCCATCCA
Sarcophilus harrisii genome assembly, chromosome: 5.
LR735558.1:97248051-97248070
CTTATCATAAAATATGAAGCCAAAACATTC97248051GATGGAAGAATGAATAAACAAGAAACAAATCCCATAATAATAAGCTATTT
Bos taurus genome assembly, chromosome: 28.
LR962884.1:18144561-18144580
CAAAAGGTGGAAGCGACCCAAGTGTCCACT18144561GATGGAAGAATGAATAAACAAAATGGAATTAAACCTCTGTCTTTAGATTT
Cervus elaphus genome assembly, chromosome: 18.
OU343095.1:42246568-42246587
CAAGAGGCAAAAGCAACTTAAATATTTAAT42246568GATGGAAGAATGAATAAACAAGATGTGGTATAAACATACAAATGGAATTT
Orcinus orca genome assembly, chromosome: 5.
OW443364.1:145399747-145399766
AGCCAAGGCAGAAGCAACACAAGTGTCCTT145399747GATGGAAGAATGAATAAACAAAATGTGGTCCATCCCACATGATGGAATAT
Lagenorhynchus albirostris genome assembly, chromosome: 5.
OX459076.1:141778941-141778960
AGCCAAGGCAGAAGCAACGCAAGTGTCCTT141778941GATGGAAGAATGAATAAACAAAATGTGGTCCATCCCGCATGATGGAATAT
Lagenorhynchus albirostris genome assembly, chromosome: 7.
OX459079.1:9703579-9703598
CAAAGAAATGATCAGATAAACAATGAAATC9703579GATGGAAGAATGAATAAACAAAAAGGAATGAAGGATAGGGAAGGGAGGGA
Lagenorhynchus albirostris genome assembly, chromosome: 7.
OX459079.1:19849648-19849667
CCAAATGATGGAAACAACCCACATGTCATC19849648GATGGAAGAATGAATAAACAAGATCTGGTTTACCCATACAATGAAATACT
Delphinus delphis genome assembly, chromosome: 6.
OX465332.1:9513449-9513468
CAAAGAAATGATCAGATAAACAACGAAATC9513449GATGGAAGAATGAATAAACAAAAAGGAATGAAGGATAGGGAAGGGAGGGA
Delphinus delphis genome assembly, chromosome: 6.
OX465332.1:19632917-19632936
CCAAAAGATGGAAACAACCCACATGTCATC19632917GATGGAAGAATGAATAAACAAGATCTGGTTTACCCATACAATGAAATACT
Stenella coeruleoalba genome assembly, chromosome: 5.
OX596389.1:140719332-140719351
AGCCAAGGCAGAAGCAACACAAGTGTCCTT140719332GATGGAAGAATGAATAAACAAAATGTGGTCCATCCCACATGACGGAATAT
Globicephala melas genome assembly, chromosome: 6.
OY734045.1:9921878-9921897
CAAAGAAATGATCAGATAAACAACGAAATC9921878GATGGAAGAATGAATAAACAAAAAGGAATGAAGGATAGGGAAGGGAGGGA
Globicephala melas genome assembly, chromosome: 6.
OY734045.1:20023791-20023810
CCAAAAGATGGAAACAACCCACATGTCATC20023791GATGGAAGAATGAATAAACAAGATCTGGTTTACCCATACAATGAAATACT
Phocoena phocoena genome assembly, chromosome: 4.
OZ004760.1:142823875-142823894
AGCCGAGGCAGAAGCAACACAAGTGTCCTT142823875GATGGAAGAATGAATAAACAAAATGTGGTCCATCCCACACGATGGAATTA
Geotrypetes seraphini genome assembly, chromosome: 4.
LR699149.1:54559443-54559462
GATTCTGAACAAAATCATTACTTTAAGCAA54559443GATGGAAGAATGAATAAACATGCACATTTAAAAAAACAAAACTGCAAAAG
Danio kyathit genome assembly, chromosome: 5.
LR812523.1:9018372-9018391
CGGATGGATAAATGGATCGATCAATAACCG9018372GATGGAAGAATGAATAAACAGGTGGATGGATAAATGGATATACAGATGGA
Thunnus albacares genome assembly, chromosome: 2.
OU607593.1:8747964-8747983
TTGTACAAAGGCATAGAGAGTGGATGAACA8747964GATGGAAGAATGAATAAACAAAAAGAGTAAGCTGACCAAGTTTCGACTGA
Falco punctatus genome assembly, chromosome: 11.
OY723444.1:25605890-25605909
TGACTGGGGACATTGATGGTTCTATTGAAA25605890GATGGAAGAATGAATAAACAGAACACTTTATTTAAACAAAACAAAAAAAA
Thunnus thynnus genome assembly, chromosome: 2.
OZ004733.1:11043551-11043570
TTGTACAAAGGCACAGAGAGTGGATGAACA11043551GATGGAAGAATGAATAAACAAAAAGAGTAAGCTGACCAAGTCTCGACTGA
Streptococcus phage Javan310, complete genome.
MK448903.1:12621-12640
TTGGATGAGTTATCCGAAACCACCAAAGGA12621GATGGAAGAATGAATAAACAAGAGTTGATTGAACAGATAAAAGGTTTAAA
Streptococcus phage Javan372, complete genome.
MK448920.1:12899-12918
TTGGATGAGTTATCCAAAACCACCAAAGGA12899GATGGAAGAATGAATAAACAAGAGTTGATTGAGGGTATTAGTCATTTACC
Sequence 507 from patent US 10233495.
MM797451.1:18388305-18388324
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG18388305GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
MAG: Bacteriophage sp. isolate 0042_48163, partial genome.
OP072970.1:10875-10894
CTGGATGAGTTATCCAAAACCACCAAAGGA10875GATGGAAGAATGAATAAACAAGAGTTGATAAAACGTATTTCGGAGCTACC
MAG: Bacteriophage sp. isolate 0718_60469, partial genome.
OP073412.1:2315-2334
CTGGATGAGTTATCCAAAACCACCAAAGGA2315GATGGAAGAATGAATAAACAAGAGTTGATAAAACGTATTTCGGAGCTGCC
MAG: Bacteriophage sp. isolate 2337_27277, partial genome.
OP074515.1:1653-1672
CTGGATGAGTTATCCAAAACCACCAAAGGA1653GATGGAAGAATGAATAAACAAGAGTTGATAAAACGTATTTCGGAGCTGCC
Eukaryotic synthetic construct chromosome X.
CP034509.1:21129656-21129675
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG21129656GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Eukaryotic synthetic construct chromosome X.
CP034534.1:21129656-21129675
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG21129656GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
CH240_379D10.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_379D10, genomic survey sequence.
CC583695.1:644-663
AGCCAAGACATGGAAACAGTGTTTTTTATT644GATGGAAGAATGAATAAACAAAATGTTGCATACATACAATGGAATATTA
Bos taurus clone CH240-6C1, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC152222.5:31722-31741
CAAAAGGTGGAAGCGACCCAAGTGTCCACT31722GATGGAAGAATGAATAAACAAAATGGAATTAAACCTCTGTCTTTAGATTT
Bos taurus clone CH240-117F3, WORKING DRAFT SEQUENCE, 14 unordered pieces.
AC162593.3:209774-209793
CAAAAGGTGGAAGCGACCCAAGTGTCCACT209774GATGGAAGAATGAATAAACAAAATGGAATTAAACCTCTGTCTTTAGATTT
Homo sapiens chromosome X clone RP11-333O6, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC240848.1:6731-6750
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG6731GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Human DNA sequence *** SEQUENCING CANCELLED *** from clone CTD-2022C3.
BX119928.2:22805-22824
CAAAAGGTAGAAGCGATCCAGGTGTCCTTG22805GATGGAAGAATGAATAAACAAAATGTGATATCTCTATATATAGGTTTTGA
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:119876206-119876225
TTTTATTTGTTAGGTTATTTTATGTAAGGT119876206GATGGAAGAATGAATAAACAATAAATTGTCTATTCCAAAGGTGATGGGCT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:47732132-47732151
TTTTATTTGTTAGGTTATTTTATGTAAGGT47732132GATGGAAGAATGAATAAACAATAAATTGTCTATTCCAAAGGTGATGGGCT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:47737751-47737770
TTTTATTTGTTAGGTTATTTTATGTAAGGT47737751GATGGAAGAATGAATAAACAATAAATTGTCTATTCCAAAGGTGATGGGCT
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:31789710-31789729
TGGGTTATATTTTGTTAGTTTATGAAAGGT31789710GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:31793232-31793251
TGGGTTATATTTTGTTAGTTTATGAAAGGT31793232GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGTTGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:70221858-70221877
ATCTTTTATTTATTAAAGGATGGGTAAGGT70221858GATGGAAGAATGAATAAACAATAAATTGTTTATTTTAATGGTGATGGAAA
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:93206697-93206716
TAATTATGTTGTTTTATTATTTTATTAAAT93206697GATGGAAGAATGAATAAACAATAAATTGGTTACTCCAAAGGTGATGGCTA
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:98780268-98780287
GTTTATTTGTTAGGTTATTTTATGTAAGGT98780268GATGGAAGAATGAATAAACAATAAATTGTCTATTCCAAAGGTGATGGGCT
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:110555588-110555607
TGGGTTATATTTTGTTAGTTTATGAAAGGT110555588GATGGAAGAATGAATAAACAATGCTTATTGGTATTAGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:10256009-10256028
ATCTTTTATTTATTAAAGGATGGGTAAGGT10256009GATGGAAGAATGAATAAACAATAAATTGTTTATTTTAATGGTGATGGAAA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:10261599-10261618
ATCTTTTATTTATTAAAGGATGGGTAAGGT10261599GATGGAAGAATGAATAAACAATAAATTGTTTATTTTAATGGTGATGGAAA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:40164575-40164594
TAAGTATGTTGTTTTATTATTTTATTAAAT40164575GATGGAAGAATGAATAAACAATAATTTGGTTACTCCAAAGGTGATGGCTA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:53526897-53526916
TAAGTATGTTGTTTTATTATTTTATTAAAT53526897GATGGAAGAATGAATAAACAATAATTTGGTTACTCCAAATGTGATGGCTA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:61248549-61248568
ATAAACAATGAATTTTTGTTTTCCTATGGT61248549GATGGAAGAATGAATAAACAATGTTGTGGTAATTGATGGAAATTATCATC
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:78065068-78065087
ATAATCAATGAATTTTTGTTTTCCTATGGT78065068GATGGAAGAATGAATAAACAATGAATTGTTTATTTCAATGGTGATGGGAA
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:85918317-85918336
TGGGTTATATTTTGTTAGTTTATGAAAGGT85918317GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:85923450-85923469
TGGGTTATATTTTGTTAGTTTATGAAAGGT85923450GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 12.
CP106716.1:43416682-43416701
TGGGTTATATTTTGTTAGTTTATGAAAGGT43416682GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 12.
CP106716.1:43421834-43421853
TGGGTTATATTTTGTTAGTTTATGAAAGGT43421834GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 12.
CP106716.1:112874385-112874404
ATAATCAATGAATTTTTGTTTTCCTATGGT112874385GATGGAAGAATGAATAAACAATGAATTGTTTATTTCAATGGTGATGGGAA
Gossypium bickii isolate GPG1lz chromosome 4.
CP106717.1:91042373-91042392
TGGGTTATATTTTGTTAGTTTATGAAAGGT91042373GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGATGATGCCGGCCA
Gossypium bickii isolate GPG1lz chromosome 4.
CP106717.1:91047693-91047712
TGGGTTATATTTTGTTAGTTTATGAAAGGT91047693GATGGAAGAATGAATAAACAATGCTTATTGGTATTGGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 4.
CP106717.1:102182424-102182443
TAAGTATGTTGTTTTATTATTTTATTAAAT102182424GATGGAAGAATGAATAAACAATAATTTGGTTACTCCAAAGGTGATGGCTA
Gossypium bickii isolate GPG1lz chromosome 7.
CP106719.1:44680678-44680697
ATCTTTTATTTATTAAAGGATGGGTAAGGT44680678GATGGAAGAATGAATAAACAATAAATTGTTTATTTTAATGGTGATGGAAA
Gossypium bickii isolate GPG1lz chromosome 7.
CP106719.1:48353869-48353888
TGGGTTATATTTTGTTAGTTTATGAAAGGT48353869GATGGAAGAATGAATAAACAATGCTTATTGGTATTAGATGATAGGAATTT
Gossypium bickii isolate GPG1lz chromosome 7.
CP106719.1:76232008-76232027
TAATTATGTTGTTTTATTATTTTATTAAAT76232008GATGGAAGAATGAATAAACAATAAATTGGTTACTCCAAAGGTGATGGCTA
Gossypium bickii isolate GPG1lz chromosome 7.
CP106719.1:86654603-86654622
ATCTTTTATTTATTAAAGGATGTGTAAGAT86654603GATGGAAGAATGAATAAACAATAAATTGTTTATTCCAAAGTGATAGGCAG
Apomyelois bistriatella genome assembly, chromosome: 1.
OX345688.1:4452837-4452856
ATGACAACTTATATCAATCTTACTTATTAT4452837GATGGAAGAATGAATAAACACTTTATTCCACCAATTACATAAATACATCA
Biomphalaria glabrata genome assembly, chromosome: 1.
OX365773.1:42098673-42098692
GGCAGTGAAAAAGCAGACATACTGGCCAAA42098673GATGGAAGAATGAATAAACAAATGAAAATTCCTCTTTATCCAGAAAAAAA
Biomphalaria glabrata genome assembly, chromosome: 8.
OX365780.1:6439054-6439073
GGCATTGAAAAAGCAGACATACTGGCCAAA6439054GATGGAAGAATGAATAAACAAACGAAAATCCCTCTCTACCCAGAAGAAAG
Meliscaeva auricollis genome assembly, chromosome: 2.
OX403617.1:64645641-64645660
TAAACAAATCATGAACAACGAAACTGACTT64645641GATGGAAGAATGAATAAACAATTTTTTTTTTTTTTTTATTTTATTTATTT
Dendrolimus pini genome assembly, chromosome: 8.
OX457132.1:8050224-8050243
CGGTGGTTCGGGCATGTGGAAAGAATGAAT8050224GATGGAAGAATGAATAAACAGATATACAATGCTTAAGTGGATGGATGCAG
Dendrolimus pini genome assembly, chromosome: 19.
OX457143.1:18443130-18443149
CGGTGGTTCGGGCATGTGGAAAGAATGAAT18443130GATGGAAGAATGAATAAACAGATATACAATACAAAAGTGGATGGATGCAG
Dendrolimus pini genome assembly, chromosome: 22.
OX457146.1:14131447-14131466
CCGGTGGTTGGGCATGTGGAAAGAATGAAT14131447GATGGAAGAATGAATAAACAGATATACAATGCAAAAGTGGATGGATGCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGGAAGAATGAATAAACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGGAAGAATGAATAAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGAAGAATGAATAAACA&k=0&no_gap=0&offset=0&limit=50
0.332 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTTATTCATTCTTCCATC&k=0&no_gap=0&offset=0&limit=0
0.332 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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