GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 16:14:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Accipiter gentilis genome assembly, chromosome: 22.
OV839383.1:15216303-15216322
GGCATTTAGAATTGCTGTCACCTTATCGTT15216303GATGGTCAGGCAGAGCTAGTCACACCATGATTGTTGCAGTTGTCTTATAC
EST1056121 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT545481.1:239-258
CACAATGTGGTGGGATCCTCTGAGTTTGGC239GATGGTCAGGCAGAGCTAGTTTCATCTCCTCTGGCTTCACCTTCAGGGGT
EST1068125 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT557485.1:870-889
CACAATGTGGTGGGATCCTCTGAGTTTGGC870GATGGTCAGGCAGAGCTAGTTTCATCTCCTCTGGCTTCAC
UFL_563_20 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES797490.1:493-512
CACAATGTGGTGGGATCCTCTGAGTTTGGC493GATGGTCAGGCAGAGCTAGTTTCATCTCCTCTGGCTTCACCTTCAGGGGT
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:106448690-106448709
CACAATGTGGTGGGATCCTCCGAGTTTGGC106448690GATGGTCAGGCAGAGCTAGTTTCATCTCCTCTGGCTTCACCTTCAGGGGT
Gossypioides kirkii chromosome KI_01.
CP032244.1:8708568-8708587
ACCCTTGAAGGTGAAGCCAGAGGAGATGAA8708568ACTAGCTCTGCCTGACCATCGCCAACCTCAGAGGATCCCACCACATTGTG
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:19225577-19225596
ACCCCTGAAGGTGAAGCCAGAGGAGATGAA19225577ACTAGCTCTGCCTGACCATCGCCAAACTCGGAGGATCCCACCACATTGTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGGTCAGGCAGAGCTAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGGTCAGGCAGAGCTAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.243 | 0.234 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGTCAGGCAGAGCTAGT&k=0&no_gap=0&offset=0&limit=50
0.274 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=ACTAGCTCTGCCTGACCATC&k=0&no_gap=0&offset=0&limit=45
0.275 | 0.001 | cgi_end;

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