GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 07:06:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Raja brachyura genome assembly, chromosome: 18.
OY740798.1:1171194-1171213
AGGTAGATAGTAGTTCAGCGCTGCTCTCTA1171194GATGTGGTGGGATCTTTGGTTTAGTTTAGTTTATAGATACGGCGCAGAAA
Sequence 3146 from patent US 8912317.
HK262060.1:18-37
TGTTAGAGAGATGGTGA18GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCT
4ETGS72H_UP_001_G06_16MAY2003_018 Brassica napus 4ETGS72h Brassica napus cDNA 5', mRNA sequence.
CN726917.1:261-280
GCAATGGTGGTGGTGTGAGGGAGATGGTTA261GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACATCATCGTCTTCT
Solanum lycopersicum cDNA, clone: LEFL2017E07, 5' end, expressed in fruit.
DB714449.1:659-678
GGAAAATGGAACTGTAGATGGTCAGGGAAA659GATGTGGTGGGATCTTTGGTGGNATAGAACCCTGGTACACACCAGAGGCC
Brassica oleracea var. viridis mRNA, clone: KALE-036B17, 3' end sequence.
DK528970.1:336-355
GTAGTAATGTTGGTGTGAGGGAGATTGTGA336GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
Brassica oleracea var. viridis mRNA, clone: KALE-076N13, 3' end sequence.
DK544522.1:279-298
GCAATGGTGGTGGTGTGAGGGAGATGGTTA279GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
Brassica oleracea var. viridis mRNA, clone: KALE-147D05, 3' end sequence.
DK571400.1:353-372
GCAATGGTGGTGGTGTGAGGGAGATGGTTA353GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
19ACACYS_UP_021_B01_29OCT2004_013 Brassica napus 19ACACYS Brassica napus cDNA 5', mRNA sequence.
DY007990.1:443-462
GTAGTAATGTTGGTGTGAGGGAGATTGTGA443GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
BNSCS3CT_UP_015_C11_10JAN2005_091 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466136.1:255-274
GTAGTAATGTTGGTGTGAGGGAGATTGTGA255GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
26RDBNT_UP_038_B11_16FEB2004_093 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
EE513443.1:234-253
GTAGCAATGTTGGTGTGAGGGAGATTGTGA234GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCCTCGTCATCG
49RDOAT_UP_015_H10_29SEP2004_066 O. Alba 49RDOAT Brassica oleracea cDNA 5', mRNA sequence.
EE534859.1:267-286
GTAGTAATGTTGGTGTGAGGGAGATTGTGA267GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
9RDBNGA_UP_070_C06_03APR2005_044 Brassica napus - 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
EE545576.1:70-89
GTAGTAATGTTGGTGTGAGGGAGATTGTGA70GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
OL3871R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3871, mRNA sequence.
EH419339.1:269-288
GCAATGGTGGTGGTGTGAGGGAGATGGTTA269GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCCTCTTCT
EST4336 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B201C031, mRNA sequence.
EL626830.1:462-481
GTAGTAATGTTGGTGTGAGGGAGATTGTGA462GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
24RDBNH_UP_150_B11_14DEC2006_093 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES919963.1:99-118
GTAGCAATGTTGGTGTGAGGGAGATTGTGA99GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCCTCGTCATCG
24RDBNH_UP_156_D08_13DEC2006_058 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES920520.1:54-73
GCAATGGTGGTGGTGTGAGGGAGATGGTTA54GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
9RDBNGA_UP_243_D04_10NOV2006_026 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES963412.1:447-466
GTAGTAATGTTGGTGTGAGGGAGATTGTGA447GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
BNSCS2CT_UP_145_E09_23APR2007_071 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV026484.1:451-470
GCAATGGTGGTGGTGTGAGGGAGATGGTTA451GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
0208653 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV142721.1:621-640
GCAATGGTGGTGGTGTGAGGGAGATGGTTA621GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
BR024667 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-072G07 5', mRNA sequence.
EX040023.1:169-188
ATGGCAATGTTGGTGTGAGGGAGATTGTGA169GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCCTCGTCATCG
BR030711 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-153D07 5', mRNA sequence.
EX046067.1:11-30
GAGATGGTTA11GATGTGGTGGGATCTTTGGTGGGCCCATTTATTATGACGTCATCGTCTTC
BR030979 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-003G04 5', mRNA sequence.
EX046335.1:374-393
GTAGCAATGGTGGTGTGAGGGAGATGGTTA374GATGTGGTGGGATCTTTGGTGGGTT
RS2GU02TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD948034.1:265-284
ATCCTAGTAGTGGTGTGAGGGAGATTGTGA265GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCTTCAACT
Raphanus sativus mRNA, clone: RSCF04J13, 5' end sequence.
FY428967.1:22-41
TTGGTGTGAGGGAGATTGTGA22GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCTTCAACT
MiTFL30_21E12 Kuras, 8 week minituber Solanum tuberosum cDNA clone MiTFL30_21E12 5', mRNA sequence.
GH638159.1:103-122
GGAAAATGGGACTGTAGATGGTCAGGGAAA103GATGTGGTGGGATCTTTGGTGGAATAGAACCCTGGTACACACCAGAGGCC
BNAOV1GH_T3_062_F01_14SEPT2007_005 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR447075.1:261-280
GCAATGGTGGTGGTGTGAGGGAGATGGTTA261GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCCTCTTCT
TSA: Sesamum indicum Locus_10852_Transcript_2/2_Confidence_1.000_Length_2109 mRNA sequence.
JP642254.1:342-361
TCATAATGGCACAATTGATGGTCAGGGGAA342GATGTGGTGGGATCTTTGGTGGAATAAGACACTAGAGTGCACCAGGGGCC
TSA: Strongylocentrotus purpuratus WHL22.770384.0 mRNA sequence.
JT107468.1:2568-2587
ACCTGGAACTAATGCTGCAGTTCCTGGAAC2568GATGTGGTGGGATCTTTGGTCTGCAGGACTGGGCTAATGAGACAGAGACC
CAP034A10.R CAP Capsella rubella genomic 3', genomic survey sequence.
KG047881.1:97-116
ACCCTAGTAATGGTGTTAGAGAGATGGTGA97GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACATCATCATCATCT
BH_PBa011A10.F BH_PBa Boechera holboellii genomic 5', genomic survey sequence.
KS396006.1:781-800
ACCCTAGTAATGGTGTGAGAGAGATGGTGA781GATGTGGTGGGATCTTTGGTGGGTTTATGATAG
Solanum lycopersicum cDNA, clone: LEFL2017E07, HTC in fruit.
AK326929.1:659-678
GGAAAATGGAACTGTAGATGGTCAGGGAAA659GATGTGGTGGGATCTTTGGTGGAATAGAACCCTGGTACACACCAGAGGCC
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB42ZD11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress).
BX829875.1:1058-1077
ACCCTAGTAATGGTGTTAGAGAGATGGTGA1058GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCT
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB55ZF09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress).
BX830047.1:962-981
ACCCTAGTAATGGTGTTAGAGAGATGGTGA962GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCT
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH26ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress).
BX831733.1:1098-1117
ACCCTAGTAATGGTGTTAGAGAGATGGTGA1098GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCT
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH32ZG09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress).
BX831840.1:1028-1047
ACCCTAGTAATGGTGTTAGAGAGATGGTGA1028GATGTGGTGGGATCTTTGGTGGGTTTNTGNTNNTGNNTNNTNNTNTTNTT
Strongylocentrotus purpuratus clone R3-1013A7, WORKING DRAFT SEQUENCE, 9 unordered pieces.
AC173554.3:130306-130325
ACCTGGAACTAATGCTGCAGTTCCTGGAAC130306GATGTGGTGGGATCTTTGGTCTGCAGGACTGGGCTAATGAGACAGAGACC
Strongylocentrotus purpuratus clone R3-3100L17, WORKING DRAFT SEQUENCE, 14 unordered pieces.
AC178302.1:6205-6224
ACCTGGAACTCATGCTGCAGTTCCTGGAAC6205GATGTGGTGGGATCTTTGGTCTGCAGGACTGGGCTAATGAGACAGAGACC
Raphanus sativus cultivar WK10039 clone RsH014A12, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.
AC255152.1:33916-33935
GTAGTAATGTTGGTGTGAGGGAGATTGTGA33916GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCTTCAACT
Arabidopsis thaliana unknown protein (At5g49100) mRNA, complete cds.
AY074276.1:1117-1136
ACCCTAGTAATGGTGTTAGAGAGATGGTGA1117GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCT
Arabidopsis thaliana clone 116332 mRNA, complete sequence.
AY084737.1:924-943
ACTCTAGTAATGGTGTTAGAGAGATGGTGA924GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCT
Arabidopsis thaliana clone U18722 unknown protein (At5g49100) mRNA, complete cds.
AY133842.1:893-912
ACCCTAGTAATGGTGTTAGAGAGATGGTGA893GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCT
Jasminum sambac cultivar Hutoumoli linkage group Lg10.
CP073641.1:27721811-27721830
GGAACAATGGCAGTACAGAAGGGTGGGTAA27721811GATGTGGTGGGATCTTTGGTGGAATAGGACTCTAAAGCACATGAGAGGTC
Jasminum sambac cultivar Hutoumoli linkage group Lg8.
CP073651.1:17853854-17853873
GAAGAATGGGAGCATTGACGGGCAGGGCAA17853854GATGTGGTGGGATCTTTGGTGGAACAGGACTCTAAAGTACACGAGGGGTC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:5932714-5932733
GTAGTAATGTTGGTGTGAGGGAGATTGTGA5932714GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCGTCATCT
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:54543604-54543623
GCAATGGTGGTGGTGTGAGGGAGATGGTTA54543604GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:14103477-14103496
GCAATGGTGGTGGTGTGAGGGAGATGGTTA14103477GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
Camelina sativa cultivar CO46 chromosome 11.
CP131541.1:39296238-39296257
ACCCTAGTAATGGTGTGAGGGAGATGGTGA39296238GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACATCATCATCTTCT
Canna indica chromosome 8.
CP136897.1:49405530-49405549
ACAGAATGGAACAATCGACGACCAAGGCAA49405530GATGTGGTGGGATCTTTGGTGGAACAGAACTCTGGAACACACAAGGGGTC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39555787-39555806
GCAATGGTGGTGGTGTGAGGGAGATGGTTA39555787GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
Brassica rapa genome, scaffold: A06.
LR031569.1:49610262-49610281
GTAGCAATGGTGGTGTGAGGGAGATGGTTA49610262GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:13710390-13710409
ATCCTAGTAGTGGTGTGAGGGAGATTGTGA13710390GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCTTCAACT
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:53227516-53227535
GTAGCAATGGTGGTGTGAGGGAGATGGTTA53227516GATGTGGTGGGATCTTTGGTGGGTTTATGATTATGACGTCATCGTCTTCT
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:4896244-4896263
CTAGTAGCAATGGTGTTAGGGAGATGGTGA4896244GATGTGGTGGGATCTTTGGTGGGTTTATGATCATGACGTCATCGTCATCT
Fraxinus pennsylvanica genome assembly, chromosome: 1.
OU503036.1:6638555-6638574
GAATAATGGCACTGTTGATGGTCAGGGAAA6638555GATGTGGTGGGATCTTTGGTGGAATAGGACTCTAAAGCACACCAGAGGTC
Bromus sterilis genome assembly, chromosome: 7.
OX465601.1:193109376-193109395
TGTCACCCTCCCTCCATGCTAGTGTTTTGG193109376GATGTGGTGGGATCTTTGGTTGTAATGATGTGTCTGATGCGCATCGGAAA
Euphrasia confusa genome assembly, chromosome: 20.
OX940968.1:10128971-10128990
TAATAATGGGACAATTGATGGTCAAGGGAA10128971GATGTGGTGGGATCTTTGGTGGAATAAGACACTAAATCACACGAGAGGCC
Euphrasia confusa genome assembly, chromosome: 22.
OX940970.1:9789993-9790012
TAATAATGGGACAATTGATGGTCAAGGCAA9789993GATGTGGTGGGATCTTTGGTGGAATAAGGCGCTAAATCGCACGAGAGGCC
Sphenostylis stenocarpa genome assembly, chromosome: 9.
OY731406.1:27810045-27810064
ACAAAATGGGACAGTTGATGGTCAAGGAAA27810045GATGTGGTGGGATCTTTGGTGGAACAGAACATTGGAGCATACAAGAGGGC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:13710390-13710409
ATCCTAGTAGTGGTGTGAGGGAGATTGTGA13710390GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTCCATCTTCAACT
Cochlearia excelsa genome assembly, chromosome: 1.
OY748327.1:2127935-2127954
GTAGCAATGGAGGTGTTAGAGAGATGGTGA2127935GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACTTCATCGTCTTCT
Draba incana genome assembly, chromosome: 4.
OY755205.1:16462925-16462944
ATAATAACAATGGTGTGAGGGAGATGGTGA16462925GATGTGGTGGGATCTTTGGTGGGTTTATGATCATGACGTCATCATCTTCT
Nasturtium officinale genome assembly, chromosome: 11.
OY978509.1:8020385-8020404
CTAGTAATGGTGGAGTTAGGGAGATGGTTA8020385GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACCTCATCTTCATCT
Lepidium didymum genome assembly, chromosome: 6.
OY986996.1:18788737-18788756
ACCCTAGTAATGGTGTTAGGGAGATGGTGA18788737GATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACATCATCATCATCA
Cardamine chenopodiifolia genome assembly, chromosome: 6.
OZ000464.1:9451276-9451295
CTAGTAATGGTGGTGTGAGGGAGATGGTTA9451276GATGTGGTGGGATCTTTGGTGGGTTTACGATAATGACGCCATCTTCATCT
Caenorhabditis sinica genome assembly, chromosome: II.
OZ009941.1:11660047-11660066
CATTGAGACTTGGTTTGGAAGGCGATGCCA11660047GATGTGGTGGGATCTTTGGTAGTTGACGGCGTGGAATTGTTGGAGTGAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGTGGTGGGATCTTTGGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGTGGTGGGATCTTTGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.006 | 1.997 | search_plus_done; http://172.18.8.135:50400/match?q=GATGTGGTGGGATCTTTGGT&k=0&no_gap=0&offset=0&limit=50
2.064 | 0.059 | search_minus_done; http://172.18.8.135:50400/match?q=ACCAAAGATCCCACCACATC&k=0&no_gap=0&offset=0&limit=0
2.064 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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