GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:28:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Fraxinus pennsylvanica genome assembly, chromosome: 9.
OU503044.1:28468083-28468102
TATTCCTAGCGAACATGATATTAATGGCTT28468083GATTCATGGTCTTTGTAAAGTCAAATTGATTCAACAAGCATATGTTGTGT
Ligustrum vulgare genome assembly, chromosome: 2.
OY743169.1:7371798-7371817
TATTCCTAGAAAACGTGATATGAATTCCTT7371798GATTCATGGTCTTTGTAAAGTCGGAATGATTCAACAGGTATAGGTCGTGT
Spergularia marina genome assembly, chromosome: 2.
OY804545.1:1096789-1096808
GAGCCTTGACGTGTCAACTTATTCACTATT1096789GATTCATGGTCTTTGTAAAGTTGACAATTGTGAGCGGGCTTTCCAACTAT
Spergularia marina genome assembly, chromosome: 7.
OY804550.1:967228-967247
GAGCCTTGACGTGTCAACTTATTCACTATT967228GATTCATGGTCTTTGTAAAGTTGACAATTGTGAGCGGGCTTTCCAACTAT
Viola odorata genome assembly, chromosome: 6.
OY829542.1:26624921-26624940
GTGACAAAGTGTATGTTTTGAAAACAAGGT26624921GATTCATGGTCTTTGTAAAGCACGAAGGTCACGAAATCTATCTAAAAACA
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:470311284-470311303
CCCTCCTTCTTCTATCTTATTCCTTGGGTG470311284GATTCATGGTCTTTGTAAAGCTTGAGCATGTGGTTGAATAACATACTCTT
Leuctra nigra genome assembly, chromosome: 7.
OW203768.1:14424140-14424159
GTCTTATAAGATTACGGCAGAGCGAATGGT14424140GATTCATGGTCTTTGTAAAGGGAGAGTAGCGTCTGGTTTAATTTTAATTC
Diogma glabrata genome assembly, chromosome: 3.
OY856188.1:89935351-89935370
TCAACATTTTAGACGTTAGGTCATACGAAC89935351GATTCATGGTCTTTGTAAAGTATCAGTAAAGTTGCTAAAAATCGTGAATA
Fraxinus pennsylvanica genome assembly, chromosome: 2.
OU503037.1:5682123-5682142
ACACAACATATGCCTGTTCAATCATTCCGA5682123CTTTACAAAGACCATGAATCAAGGCATTCATATCACGCTTTCTAGGAATA
Chenopodium album genome assembly, chromosome: 15.
OX419222.1:45413124-45413143
CAATTTGTGTGCTACATTATTATCCCCTCG45413124CTTTACAAAGACCATGAATCACTAGTAAAATTAGAAGAAAAAAAAAATCT
Spergularia bocconei genome assembly, chromosome: 2.
OY734943.1:1101400-1101419
ACAGTTGGAAAGCCCGCTCACAATTGTCAA1101400CTTTACAAAGACCATGAATCAATAGTGAATAAGTTGACACGTCAAGGCTC
Spergularia bocconei genome assembly, chromosome: 4.
OY734945.1:27491609-27491628
ATAGTTGGAAAGCCCGCTCACAATTGTCAA27491609CTTTACAAAGACCATGAATCAATAGTGAATAAGTTGACACGTCAAGGCTC
Coelioxys conoideus genome assembly, chromosome: 1.
OX392449.1:13657570-13657589
TTGCGAATTCACAAATCTACATGTCCATCA13657570CTTTACAAAGACCATGAATCTAGTAATGTATAAACCTAAATATATAAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATTCATGGTCTTTGTAAAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATTCATGGTCTTTGTAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=GATTCATGGTCTTTGTAAAG&k=0&no_gap=0&offset=0&limit=50
0.116 | 0.020 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTACAAAGACCATGAATC&k=0&no_gap=0&offset=0&limit=42
0.119 | 0.003 | cgi_end;

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