GGGenome | Results

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2025-04-10 21:05:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:55701388-55701407

GATTTTGAGATGAATTCATTCGCTATGATG55701388GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG

Brassica napus genome assembly, chromosome: A06.
HG994360.1:40693726-40693745

GATTTTGAGATGAATTCATTCGCTATGATG40693726GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTGT

Brassica rapa isolate C634 glabra 1 (GL1) gene, partial cds.
HQ162470.1:1527-1546

GATTTTGAGATGAATTCATTCGCTATGATG1527GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG

Brassica rapa subsp. rapa cultivar Tsuda MYB domain protein 0 (MYB0) mRNA, complete cds.
HQ292618.1:712-731

GATTTTGAGATGAATTCATTCGCTATGATG712GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG

Brassica rapa subsp. nipposinica GL1 mRNA for trichome differentiation protein GL1, complete cds, cultivar: Kyo-nishiki.
LC142718.1:638-657

GATTTTGAGATGAATTCATTCGCTATGATG638GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG

Brassica rapa subsp. nipposinica GL1 mRNA for trichome differentiation protein GL1, complete cds, cultivar: Kyo-mizore.
LC142719.1:638-657

GATTTTGAGATGAATTCATTCGCTATGATG638GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG

Brassica rapa CR Kyobare BrGL1 gene for GLABRA1, complete cds, allele: 1.
LC669916.1:1530-1549

GATTTTGAGATGAATTCATTCGCTATGATG1530GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG

Brassica rapa CR Kyobare BrGL1 gene for GLABRA1, complete cds, allele: 2.
LC669917.1:1549-1568

GATTTTGAGATGAATTCATTCGCTATGATG1549GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG

Brassica rapa Hanakazari BrGL1 pseudogene, GLABRA1.
LC669918.1:1536-1555

GATTTTGAGATGAATTCATTCGCTATGATG1536GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAG

Brassica rapa genome, scaffold: A06.
LR031569.1:50815909-50815928

GATTTTGAGATGAATTCATTCGCTATGATG50815909GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG

Brassica rapa genome assembly, chromosome: A06.
LS974622.2:54433390-54433409

GATTTTGAGATGAATTCATTCGCTATGATG54433390GATTTTGCGTCCGGTGATACTGGCTACTGCCTCTAGTTTTGATAATTTTG

000502KSFA004906HT (KSFA) A. deliciosa small fruit 13d post pollination Actinidia deliciosa cDNA clone KSFAA00490, mRNA sequence.
FG397246.1:30-49

CGTCATTGGTGGGCCACACGGTGATGCAG30GTATCACCGGACGCAAAATCATCATCGATACTTATGGTGGTTGGGGAGCC

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004A14, complete sequence.
AC189633.2:76284-76303

ACAAATTATCAAAACTAGAGGCAGTAGCCA76284GTATCACCGGACGCAAAATCCATCATAGCGAATGAATTCATCTCAAAATC

Pieris rapae genome assembly, chromosome: 23.
LR990605.1:1259173-1259192

CACTCCTCCGGTGTAAGTCACACCGGAGGA1259173GTATCACCGGACGCAAAATCAAAGTAAAGGCTTCTTATGCAATTTATGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.154 | 0.145 | search_plus_done; http://172.18.8.135:50400/match?q=GATTTTGCGTCCGGTGATAC&k=0&no_gap=0&offset=0&limit=50
0.257 | 0.102 | search_minus_done; http://172.18.8.135:50400/match?q=GTATCACCGGACGCAAAATC&k=0&no_gap=0&offset=0&limit=39
0.259 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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