GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 03:14:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Dianthus caryophyllus mRNA, clone: CES11_O10, 5' end sequence.
FY386601.1:82-101
TTTTGAAAAACAACAACAGCCCACCATTTT82GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Dianthus caryophyllus mRNA, clone: CES15E12, 5' end sequence.
FY387879.1:7-26
GATTTT7GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Dianthus caryophyllus mRNA, clone: CES20_E10, 5' end sequence.
FY389761.1:201-220
TTTTGAAAAACAACAACAGCCCACCATTTT201GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Dianthus caryophyllus mRNA, clone: CES25_G22, 5' end sequence.
FY391699.1:73-92
TTTTGAAAAACAACAACAGCCCACCATTTT73GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Dianthus caryophyllus mRNA, clone: CFES10N05, 5' end sequence.
FY397883.1:18-37
CAACAGCCCACCATTTT18GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Dianthus caryophyllus mRNA, clone: CFES12J03, 5' end sequence.
FY398541.1:32-51
TTTTGAAAAACAACAACAGCCCACCATTTT32GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Dianthus caryophyllus mRNA, clone: CFES16_D04, 5' end sequence.
FY399915.1:5-24
TTTT5GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Dianthus caryophyllus mRNA, clone: CFES25_A11, 5' end sequence.
FY403200.1:45-64
TTTTGAAAAACAACAACAGCCCACCATTTT45GCAACCCAAAATCTCTCACCAAATTAAACTATTCGTATATAGAAGTATTA
Euplexia lucipara genome assembly, chromosome: 1.
OV179143.1:20305955-20305974
TGGTTTGATTTGAATCTTCTTTAGGTAATT20305955GGTGAGAGATTTTGGGTTGCTGCTGAGCAATTCCAAACGGAAAAACCTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAACCCAAAATCTCTCACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAACCCAAAATCTCTCACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.632 | 0.623 | search_plus_done; http://172.18.8.135:50400/match?q=GCAACCCAAAATCTCTCACC&k=0&no_gap=0&offset=0&limit=50
0.678 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGAGAGATTTTGGGTTGC&k=0&no_gap=0&offset=0&limit=42
0.679 | 0.001 | cgi_end;

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