GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:53:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Micromys minutus genome assembly, chromosome: 33.
OZ004813.1:5819563-5819582
ATAGATTCACTGGCATCAACCTCATCACAT5819563GCAAGCAATCAAAGGAGAGGGGGAGGGAAGGAGAGAGGGACAGGGACAGG
Sylvilagus floridanus genome assembly, chromosome: 19.
OX463241.1:97007979-97007998
TTAAATAATTTATATTTCAGTGTGAGTGTT97007979GCAAGCAATCAAAGGAGAGGGAGAGCAACTGATGGACTCGTGGCCTTCAT
Dianthus caryophyllus mRNA, clone: CES05N15, 5' end sequence.
FY384308.1:327-346
TCATTAAAATTGATCAAAAACCTAAAAAAT327GCAAGCAATCAAAGGAGAGGATTATACAAAAGGCGTCGACGACAACCGTG
Dianthus caryophyllus mRNA, clone: CES06D06, 5' end sequence.
FY384440.1:417-436
TCATTAAAATTGATCAAAAACCTAAAAAAT417GCAAGCAATCAAAGGAGAGGATTATACAAAAGGCGTCGACGACAACCGTG
Dianthus caryophyllus mRNA, clone: CES14A20, 5' end sequence.
FY387413.1:354-373
TCATTAAAATTGATCAAAAACCTAAAAAAT354GCAAGCAATCAAAGGAGAGGATTATACAAAAGGCGTCGACGACAACCGTG
Dianthus caryophyllus mRNA, clone: CES31J17, 5' end sequence.
FY394017.1:104-123
TCATTAAAATTGATCAAAAACCTAAAAAAT104GCAAGCAATCAAAGGAGAGGATTATACAAAAGGCGTCGACGACAACCGTG
Dianthus caryophyllus mRNA, clone: CFES18_M05, 5' end sequence.
FY400877.1:438-457
TCATTAAAATTGATCAAAAACCTAAAAAAT438GCAAGCAATCAAAGGAGAGGATTATACAAAAGGCGTCGACGACAACCGTG
Chionomys nivalis genome assembly, chromosome: 4.
OX465452.1:62806327-62806346
CTGGTTCTGAAGCACGACCTTACTGCCTTC62806327CCTCTCCTTTGATTGCTTGCCAAACTGGCTTACTCTCCTAGGTGATGGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAAGCAATCAAAGGAGAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAGCAATCAAAGGAGAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.509 | 0.500 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGCAATCAAAGGAGAGG&k=0&no_gap=0&offset=0&limit=50
0.539 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=CCTCTCCTTTGATTGCTTGC&k=0&no_gap=0&offset=0&limit=43
0.540 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).