GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 10:56:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:585626-585645
GCTGAAGCGAATCGACGACAAGATCAGGCG585626GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:558248-558267
GCTGAAGCGAATCGACGACAAGATCAGGCG558248GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:659735-659754
GCTGAAGCGAATCGACGACAAGATCAGGCG659735GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:657500-657519
GCTGAAGCGAATCGACGACAAGATCAGGCG657500GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:650890-650909
GCTGAAGCGAATCGACGACAAGATCAGGCG650890GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus domestica genome assembly, chromosome: 17.
OU696693.1:654755-654774
GCTGAAGCGAATCGACGACAAGATCAGGCG654755GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus domestica genome assembly, chromosome: 17.
OU744558.1:633807-633826
GCTGAAGCGAATCGACGACAAGATCAGGCG633807GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus domestica genome assembly, chromosome: 17.
OU744969.1:651435-651454
GCTGAAGCGAATCGACGACAAGATCAGGCG651435GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Malus domestica genome assembly, chromosome: 17.
OU745007.1:652682-652701
GCTGAAGCGAATCGACGACAAGATCAGGCG652682GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTG
Sambucus nigra genome assembly, chromosome: 8.
OX422214.1:53620789-53620808
TTATTTTCATCATCGTATCGTGGTGCGATG53620789GCAAGTGACCTTTTCCAAGCTACAGTTGGTCACGGGGATGAGACATGGGA
Ligustrum vulgare genome assembly, chromosome: 2.
OY743169.1:14255698-14255717
GATGAAAAGGATCGAAAATGCAACAAGCAG14255698GCAAGTGACCTTTTCCAAGCGCAGAAGTGGGCTGCTCAAGAAGGCCTTTG
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:697581-697600
GCTGAAGCGAATCGACGACAAGATCAGGCG697581GCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGCG
Alviniconcha strummeri genome assembly, chromosome: 8.
OY757548.1:6257887-6257906
TCAGATTATGCTTTGTTCACCTGTTTAGAG6257887GCAAGTGACCTTTTCCAAGCGTGCATGAAGATTTGATTCAAGTCTGAGAA
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:33420765-33420784
CACGTGCCTTCTTGATCAGCCCGCTTCTCC33420765GCTTGGAAAAGGTCACTTGCCGCCTGATCTTGTCGTCGATTCGCTTCAGC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:34251882-34251901
CACGTGCCTTCTTGATCAGCCCGCTTCTCC34251882GCTTGGAAAAGGTCACTTGCCGCCTGATCTTGTCGTCGATTCGCTTCAGC
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:33488035-33488054
CACGTGCCTTCTTGATCAGCCCGCTTCTCC33488035GCTTGGAAAAGGTCACTTGCCGCCTGATCTTGTCGTCGATTCGCTTCAGC
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:26449145-26449164
CACGTGCCTTCTTGATCAGCCCGCTTCTCC26449145GCTTGGAAAAGGTCACTTGCCGCCTGATCTTGTCGTCGATTCGCTTCAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAAGTGACCTTTTCCAAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAGTGACCTTTTCCAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGTGACCTTTTCCAAGC&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTGGAAAAGGTCACTTGC&k=0&no_gap=0&offset=0&limit=37
0.127 | 0.003 | cgi_end;

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