GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 12:22:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 5, clone: LjT55H21, TM1062.
AP007778.2:89431-89450
TTTTGTCAAAATTTGGATCATCTTAATTAA89431GCATACTTTCTCTATGGCTGATTTTTTTTGGAAAGCCAATAAAGTTGGGG
Lotus japonicus genomic DNA, chromosome 5, clone: LjT30P03, TM0148.
AP004970.1:13672-13691
TTTTGTCAAAATTTGGATCATCTTAATTAA13672GCATACTTTCTCTATGGCTGATTTTTTTTGGAAAGCCAATAAAGTTGGGG
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:61731945-61731964
TTTTGTCAAAATTTGGATCATCTTAATTAA61731945GCATACTTTCTCTATGGCTGATTTTTTTTGGAAAGCCAATAAAGTTGGGG
Onychomys leucogaster genome assembly, chromosome: 16.
OX460386.1:54633623-54633642
TCTCAGACCAGGGCTGCAGAAACTCAGCCC54633623CAGCCATAGAGAAAGTATGCAATGACTTGGTTCTCAGCTACTGTGACACT
Onychomys leucogaster genome assembly, chromosome: 16.
OX460433.1:52408838-52408857
TCTCAGACCAGGGCTGCAGAAACTCAGCCC52408838CAGCCATAGAGAAAGTATGCAATGACTTGGTTCTCAGCTACTGTGACACT
Schistosoma turkestanicum genome assembly, chromosome: 4.
OX103974.1:34706711-34706730
TAGAGGTGTATCTAAAGACAAAGTTCAGAG34706711CAGCCATAGAGAAAGTATGCAATGCTTCTAAAATGATTATAAGTGAAATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCATACTTTCTCTATGGCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATACTTTCTCTATGGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=GCATACTTTCTCTATGGCTG&k=0&no_gap=0&offset=0&limit=50
0.137 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCCATAGAGAAAGTATGC&k=0&no_gap=0&offset=0&limit=47
0.139 | 0.002 | cgi_end;

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