GGGenome | Results

2025-03-27 15:05:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Pv043B_M13F_E04.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE711573.1:306-325

TGGAAGGGCGCCTGCTTCTACAAGAACACA306GCATGGATGGTGTTTCACAACAAGAGCCTCACTGAATATGGCGGCGGAAC

UCRVU05_CCNN3868_b1 Cowpea IT84S-2049 Mixed Tissue and Conditions cDNA Library UCRVU05-2-2 Vigna unguiculata cDNA clone CCNN3868.b1, mRNA sequence.
FG840251.1:288-307

TGGAAGGGCGCCTGCTTCTACCAGAACAAA288GCATGGATGGTGTTTCACAACAAGAGCCAAACTGAATATGGCGGCGGAAC

UCRVU07_CCNP12731_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP12731.b1, mRNA sequence.
FG878928.1:310-329

TGGAAGGGCGCCTGCTTCTACCAGAACAAA310GCATGGATGGTGTTTCACAACAAGAGCCAAACTGAATATGGCGGCGGAAC

Vigna angularis mRNA, clone: VES11P02.
HX946589.1:294-313

TGGAAGGGCGCCTGCTTCTACGAGAACAAA294GCATGGATGGTGTTTCACAACAAGAGCCAAACTGAATATGGCGGCGGAAC

seq3741 091111_plate_21f24.b1 Common bean full-length cDNA Library Phaseolus vulgaris cDNA 5', mRNA sequence.
JK040538.1:334-353

TGGAACGGCGCCTGCTTCTACAAGAACACA334GCATGGATGGTGTTTCACAACAAGAGCCTCCCTGAATATGGCGGCGGAAC

seq5968 091111_plate_2p06.b1 Common bean full-length cDNA Library Phaseolus vulgaris cDNA 5', mRNA sequence.
JK042364.1:364-383

TGGAAGGGCGCCTGCTTCTACAAGAACACA364GCATGGATGGTGTTTCACAACAAGAGCCTCACTGAATATGGCGGCGGAAC

Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H088E13, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces.
AC272337.1:68015-68034

TGGAAGGGCGCCTGCTTCTACCAGAACAAA68015GCATGGATGGTGTTTCACAACAAGAGCCAAACTGAATATGGCGGCGGAAC

Vigna unguiculata cultivar Xiabao 2 chromosome Vu08.
CP039351.1:46389557-46389576

TGGAAGGGCGCCTGCTTCTACCAGAACAAA46389557GCATGGATGGTGTTTCACAACAAGAGCCAAACTGAATATGGCGGCGGAAC

Lasiommata megera genome assembly, chromosome: 11.
OV743318.1:9079521-9079540

ATAAGGATAGCCCGAGGCCAGAGAACTATG9079521GCATGGATGGTGTTTCACAATGAACTGTAAATTGATTTATTATTCTATTC

Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
AP015036.1:2545138-2545157

GTTCCGCCGCCATATTCAGTTTGGCTCTTG2545138TTGTGAAACACCATCCATGCTTTGTTCTCGTAGAAGCAGGCGCCCTTCCA

Acrobasis suavella genome assembly, chromosome: 14.
OW971942.1:5961538-5961557

AATGAAATAAGTAGATTTTTTATTTTAAAA5961538TTGTGAAACACCATCCATGCTGCAAACGAAACGAAAGTTCTCAAACAGGA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.530 | 0.521 | search_plus_done; http://172.18.8.135:50400/match?q=GCATGGATGGTGTTTCACAA&k=0&no_gap=0&offset=0&limit=50
0.564 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTGAAACACCATCCATGC&k=0&no_gap=0&offset=0&limit=41
0.565 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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