GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 02:54:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JP 2011188846-A/132: Method of Distinglishing Radish Varieties.
HV516433.1:1-22
1GCCACGTGTTACTTGTTCGGTA
RS2AU09JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730879.1:75-96
GGAGACATAAAAATTACAAACAATGTCACG75GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
RR4FE72JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD554797.1:91-112
GGAGACATAAAAATTACAAACAATGTCACG91GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
RS2FP83JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD575220.1:54-75
GGAGACATAAAAATTACAAACAATGTCACG54GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
RR1H840JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD961607.1:159-180
GGAGACATAAAAATTACAAACAATGTCACG159GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8935.
FX664605.1:75-96
GGAGACATAAAAATTACAAACAATGTCACG75GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_56715.
FX755066.1:5-26
CACG5GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:66761-66782
GGAGACATAAAAATTACAAACAATGTCACG66761GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:66761-66782
GGAGACATAAAAATTACAAACAATGTCACG66761GCCACGTGTTACTTGTTCGGTAGAGAACAATTATGTACTCATCATCTATAAG
JP 2011188846-A/29: Method of Distinglishing Radish Varieties.
HV516330.1:379-400
CTTATAGATCATGAGTACATAATTGTTCTC379TACCGAACAAGTAACACGTGGCC
RR3A027TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV547544.1:761-782
TACCTTATAGATGATTACATAATTGTTCTC761TACCGAACAAGTAACACGTGGCCGTGACATTGTTTGTA
RS2G614TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD945986.1:485-506
CTTATAGATGATGAGTACATAATTGTTCTC485TACCGAACAAGTAACACGTGGCCGTGACATTGTTTGTAATTTTTATGTCTCC
RR1H840TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD966038.1:107-128
CTTATAGATGATGAGTACATAATTGTTCTC107TACCGAACAAGTAACACGTGGCCGTGACATTGTTTGTAATTTTTATGTCTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCACGTGTTACTTGTTCGGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCACGTGTTACTTGTTCGGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.433 | 0.424 | search_plus_done; http://172.18.8.135:50400/match?q=GCCACGTGTTACTTGTTCGGTA&k=0&no_gap=0&offset=0&limit=50
0.703 | 0.270 | search_minus_done; http://172.18.8.135:50400/match?q=TACCGAACAAGTAACACGTGGC&k=0&no_gap=0&offset=0&limit=41
0.706 | 0.003 | cgi_end;

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