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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-16 23:52:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Parambassis ranga genome assembly, chromosome: 10.
LR131961.1:15826236-15826255
AGATCAATGGTGCTTCTGTCATGATCGCAG15826236GCCAGAGATAGTGTGAGAGCTGCAGACACGCTACATGTGTGCACATCATA
Sequence 50843 from Patent WO2008034648.
FB831570.1:86-105
TTTAAAAAGGAGTCCAACCAGAGAACGAGA86GCCAGAGATAGTGTGAGAGCATTAGCCTTAGAGAGAGAGAGAGAGAGCTT
Sequence 50843 from Patent EP2090662.
HB701629.1:86-105
TTTAAAAAGGAGTCCAACCAGAGAACGAGA86GCCAGAGATAGTGTGAGAGCATTAGCCTTAGAGAGAGAGAGAGAGAGCTT
Sequence 195325 from Patent EP2090662.
HB846111.1:43-62
TTTAAAAAGGAGTCCAACCAGAGAACGAGA43GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
38RDBRM_UP_006_E12_31MAR2004_088 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX266068.1:36-55
TTTAAAAAGGAGTCCAACCAGAGAACGAGA36GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
38RDBRM_UP_018_C12_01APR2004_092 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267123.1:2-21
G2GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
38RDBRM_UP_026_H07_12JUL2004_049 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267805.1:2-21
G2GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
38RDBRM_UP_046_H04_16JUL2004_018 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX269344.1:4-23
GGA4GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
39RDBRT_UP_041_H02_21JUL2004_002 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272537.1:2-21
G2GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
BNARO1GH_T3_017_E07_25NOV2006_055 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES902005.1:68-87
TTTAAAAAGGAGTCCAACCAGAGAACGAGA68GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
37RDBRH_UP_100_E10_24JAN2006_072 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
ES933673.1:61-80
TTTAAAAAGGAGTCCAACCAGAGAACGAGA61GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
38RDBRM_UP_081_C02_18JAN2006_012 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
ES934551.1:2-21
G2GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
38RDBRM_UP_086_H01_19JAN2006_001 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
ES934976.1:2-21
G2GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
0084419 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV160557.1:38-57
AGGATTCGGACGAGCCACCAGTCAACGAGA38GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
BR020526 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-002A11 5', mRNA sequence.
EX035882.1:13-32
CAGAGAACGAGA13GCCAGAGATAGTGTGAGAGCATTAGCCTTAGAGAGAGAGAGAGAGAGAGA
BR086174 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-023H05 5', mRNA sequence.
EX099884.1:28-47
AAAAAGGAGTCCAACCAGAGAACGAGA28GCCAGAGATAGTGTGAGAGCATTAGCCTTAGAGAGAGAGAGAGAGAGAGA
BNAOV1GH_T3_044_C07_12JUL2007_059 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR443465.1:37-56
TTTAAAAAGGAGTCCAACCAGAGAACGAGA37GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:11113167-11113186
TTTAAAAAGGAGTCCAACCAGAGAACGAGA11113167GCCAGAGATAGTGTGAGAGCATTAGCCTTAGAGAGAGAGAGAGAGAGAGA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:11032237-11032256
TTTAAAAAGGAGTCCAACCAGAGAACGAGA11032237GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
Brassica napus stearyl-ACP desaturase (SAD1) gene, promoter region.
KJ742936.1:1799-1818
TTTAAAAAGGAGTCCAACCAGAGAACGAGA1799GCCAGAGATAGTGTGAGAGCATTAGCCTTAGAGAGAGAGAGAGAGAGCTT
Brassica rapa genome, scaffold: A03.
LR031572.1:10887941-10887960
TTTAAAAAGGAGTCCAACCAGAGAACGAGA10887941GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:11012409-11012428
TTTAAAAAGGAGTCCAACCAGAGAACGAGA11012409GCCAGAGATAGTGTGAGAGCATTAGCCTTACAGAGAGAGAGAGAGAGAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC241095.1:91331-91350
TCTCTCTCTCTCTCTCTCTCTAAGGCTAAT91331GCTCTCACACTATCTCTGGCTCTCGTTCTCTGGTTGGACTCCTTTTTAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH095M04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC241165.1:48916-48935
TCTCTCTCTCTCTCTCTCTCTAAGGCTAAT48916GCTCTCACACTATCTCTGGCTCTCGTTCTCTGGTTGGACTCCTTTTTAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCAGAGATAGTGTGAGAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCAGAGATAGTGTGAGAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.728 | 0.719 | search_plus_done; http://172.18.8.135:50400/match?q=GCCAGAGATAGTGTGAGAGC&k=0&no_gap=0&offset=0&limit=50
0.760 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=GCTCTCACACTATCTCTGGC&k=0&no_gap=0&offset=0&limit=28
0.762 | 0.001 | cgi_end;

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