GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 18:09:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR085533 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-015E10 5', mRNA sequence.
EX099243.1:132-151
CTCTGAAAAAACTCAAAAATCACACACAGA132GCGCGAGAAACTTTGATTTCACCTCTAAAAATTGCTCAGGAATGGCGCTT
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:23002704-23002723
CTCTGAAAAAACTCAAAAATCACACACAGA23002704GCGCGAGAAACTTTGATTTCACCTCTAAAAATTGCTCAGGAATGGCGCTT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:27069085-27069104
TTCTAAAAAAAACTCAAAATCACACACAGA27069085GCGCGAGAAACTTTGATTTCACCTCTAAATTTTTTTATCAAGAATGGCGC
Diabrotica virgifera virgifera genome assembly, chromosome: 5.
OU830628.1:99556128-99556147
CATATACAATTTATTGTCAAGGCTGGGGAG99556128GCGCGAGAAACTTTGATTTCAACAAAAGGGGGCGTGGTACAAAAAAGTTT
Caradrina clavipalpis genome assembly, chromosome: 13.
OW052100.1:761454-761473
GCTCAAAAGAAACTTCGCTGCGTCCCTCAA761454GCGCGAGAAACTTTGATTTCGTTATAATTGGTGTGAATTTAACAAATCAT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_26769.
FX670122.1:1457-1476
GCGCCATTCTTGATAAAAAAATTTAGAGGT1457GAAATCAAAGTTTCTCGCGCTCTGTGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5934.
FX700743.1:1401-1420
AAGCGCCATTCCTGAGCAATTTTTAGAGGT1401GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Brassica napus genome assembly, chromosome: A10.
HG994364.1:3547676-3547695
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3547676GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Brassica rapa genome, scaffold: A10.
LR031577.1:3731665-3731684
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3731665GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:6093074-6093093
GCGCCATTCTTGATAAAAAAATTTAGAGGT6093074GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTGAGTTTTTTTTAGAA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:3762997-3763016
AAGCGCCATTCCTGAGCAATTTTTAGAGGT3762997GAAATCAAAGTTTCTCGCGCTCTGTGTGTGATTTTTGAGTTTTTTCAGAG
Diabrotica balteata genome assembly, chromosome: 9.
OU898284.1:114670518-114670537
CAAACTTTTTTGTACCACGCCCCCTTTGTT114670518GAAATCAAAGTTTCTCGCGCCCCCTCTTAACAATAAATTGTGTGGGCCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGCGAGAAACTTTGATTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGCGAGAAACTTTGATTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.189 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=GCGCGAGAAACTTTGATTTC&k=0&no_gap=0&offset=0&limit=50
0.253 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=GAAATCAAAGTTTCTCGCGC&k=0&no_gap=0&offset=0&limit=45
0.258 | 0.005 | cgi_end;

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