GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 03:27:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

WO 2005095603-A/4844: Detection instruments using polynucleotide mapped on barley chromosome.
DD473096.1:339-358
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG339GCGGTCACAAGTTCTTGGATC
Sequence 4844 from patent US 7977087.
GY288376.1:339-358
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG339GCGGTCACAAGTTCTTGGATC
Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:bags19i11, 3' mRNA sequence.
AV834539.1:314-333
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG314GCGGTCACAAGTTCTTGGATCC
Triticum aestivum cDNA clone:whdl11a04, 3' end, single read.
BJ226987.1:64-83
GGAGGGGAAGAATTCCGGCGGCGCGGCGGG64GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
HI11F15w HI Hordeum vulgare subsp. vulgare cDNA clone HI11F15 3-PRIME, mRNA sequence.
CB859713.1:214-233
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG214GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
WHE2322_H06_O12ZT CS wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE2322_H06_O12, mRNA sequence.
CD454511.1:147-166
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA147GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum cDNA clone rwhem5f04 3', Y.Ogihara unpublished cDNA library Wh_EM, mRNA sequence.
CJ543500.1:112-131
AATTCGGGCGGCGCGGCGGGGCGCAGGCCG112GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum cDNA clone rwhpc11j03 3', Y.Ogihara unpublished cDNA library Wh_PCDAM, mRNA sequence.
CJ576568.1:141-160
AATTCGGGCGGCGCGGCGGGGCGCAGGCCG141GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum cDNA clone rwhpc11j04 3', Y.Ogihara unpublished cDNA library Wh_PCDAM, mRNA sequence.
CJ576569.1:123-142
AATTCGGGCGGCGCGGCGGGGCGCAGGCCG123GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum cDNA clone rwhpc11j15 3', Y.Ogihara unpublished cDNA library Wh_PCDAM, mRNA sequence.
CJ576578.1:141-160
AATTCGGGCGGCGCGGCGGGGCGCAGGCCG141GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum cDNA clone rwhpc11j16 3', Y.Ogihara unpublished cDNA library Wh_PCDAM, mRNA sequence.
CJ576579.1:112-131
AATTCGGGCGGCGCGGCGGGGCGCAGGCCG112GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1007L02, Normalized barley full-length cDNA library from germinated shoot, 3' end sequence.
DK746425.1:266-285
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG266GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1008P03, Normalized barley full-length cDNA library from flag leaf at vegetative stage, 3' end sequence.
DK746781.1:100-119
AGAATATGGGGGGCGGCGCGGCGCGGCTCG100GCGGTCACAAGTTCTTGGATCCCCGGGTGGAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1010O07, Normalized barley full-length cDNA library from germinated shoot, 3' end sequence.
DK747458.1:266-285
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG266GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1031M04, Normalized barley full-length cDNA library from flag leaf at vegetative stage, 3' end sequence.
DK754059.1:115-134
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG115GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1033J09, Normalized barley full-length cDNA library from germinated shoot, 3' end sequence.
DK754657.1:103-122
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG103GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1057D01, Normalized barley full-length cDNA library from germinated shoot, 3' end sequence.
DK762094.1:374-393
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG374GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1065L19, Normalized barley full-length cDNA library from flag leaf at vegetative stage, 3' end sequence.
DK764788.1:128-147
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG128GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1082C23, Normalized barley full-length cDNA library from seedling shoot in normal or dark, 3' end sequence.
DK770016.1:218-237
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG218GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1097N22, Normalized barley full-length cDNA library from germinated shoot, 3' end sequence.
DK775067.1:134-153
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG134GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1098L19, Normalized barley full-length cDNA library from flag leaf at vegetative stage, 3' end sequence.
DK775332.1:134-153
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG134GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv1149L08, Normalized barley full-length cDNA library from flag leaf at vegetative stage, 3' end sequence.
DK791734.1:100-119
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG100GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2028K19, Normalized and subtracted barley full-length cDNA library from seedling shoot and root in salt treatment or abscission, 3' end sequence.
DK801030.1:100-119
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG100GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2029K04, Normalized and subtracted barley full-length cDNA library from seedling shoot and root on Aluminium stress, 3' end sequence.
DK801342.1:192-211
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG192GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2045I23, Normalized and subtracted barley full-length cDNA library from seedling shoot and root on Aluminium stress, 3' end sequence.
DK806545.1:192-211
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG192GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv2091J10, Normalized and subtracted barley full-length cDNA library from seedling shoot and root in salt treatment or abscission, 3' end sequence.
DK821323.1:130-149
AAAATAGGGGGGGCGGCGCGGCGCGGCGCG130GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3005P09, Normalized barley full-length cDNA library from young panicle, 3' end sequence.
DK840871.1:264-283
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG264GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3014L23, Normalized barley full-length cDNA library from malt, 3' end sequence.
DK843732.1:99-118
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG99GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3016E07, Normalized barley full-length cDNA library from malt, 3' end sequence.
DK843910.1:192-211
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG192GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3021A15, Normalized barley full-length cDNA library from adult flower, 3' end sequence.
DK845445.1:128-147
AAAATAGGGGGGGCGGCGCGGCGCGGCGCG128GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3049M15, Normalized barley full-length cDNA library from malt, 3' end sequence.
DK854325.1:130-149
AAAATAGGGGGGGCGGCGCGGCGCGGCGCG130GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cDNA, clone: NIASHv3077E14, Normalized barley full-length cDNA library from young panicle, 3' end sequence.
DK863048.1:102-121
AATAAAGGGGGGGCGGCGCGGCGCGGCGCG102GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
MEUA831TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE344047.1:455-474
TCGCCATTGAGAAGATTGGAAAAATCCCCA455GCGGTCACAAGTTCTTGGATGTTGACCTCATCGTCGAGCTTCTCTGTGAG
MEUBI41TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE348435.1:364-383
TCGCCATTGAGAAGATTGGAAAAATCCCCA364GCGGTCACAAGTTCTTGGATGTTGACCTCATCGTCGAGCTTCTCTGTGAG
CCOU1267.g1 CCOU Avena barbata leaf, pooled from different levels of rain and nitrogen (H) Avena barbata cDNA clone CCOU1267 3', mRNA sequence.
GR333682.1:243-262
TTGGGACGGTGGTGTCGCAGCACAGCAGCA243GCGGTCACAAGTTCTTGGATCCCCTGCTGTAGCCGTAGTACGAGAGGTAC
Triticum aestivum cDNA, clone: rwhxl11058h16, 3' end sequence.
HX034985.1:52-71
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA52GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum cDNA, clone: rwhxl14068m19, 3' end sequence.
HX038346.1:217-236
GGAGGAGAAGAATTCCGGCGGCGCGGCGGA217GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum mRNA, clone: CK011-A04, 3'-EST, cultivar Chinese Spring.
LU003799.1:189-208
GGAGGAGAAGAATTCCGGCGGCGCGGCGGA189GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum mRNA, clone: CK029-G13, 3'-EST, cultivar Chinese Spring.
LU010803.1:318-337
GGAGGAGAAGAATTCCGGCGGCGCGGCGGA318GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum mRNA, clone: G08-tplb0058m15b, 3'-EST, cultivar Chinese Spring.
LU051416.1:146-165
GGAGGAGAAGAATTCCGGCGGCGCGGCGGA146GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum mRNA, clone: G05-tplb0058n10b, 3'-EST, cultivar Chinese Spring.
LU051675.1:161-180
AATTCGGGCGGCGCGGCGGGGCGCAGGCCG161GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAATAGGAAAGGTAC
TSA: Triticum aestivum Ta_Contig16148.ansp mRNA sequence.
JV889098.1:405-424
AATTCGGGCGGCGCGGCGGGGCGCAGGCCG405GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
TSA: Triticum aestivum Ta_Contig45144.ansp mRNA sequence.
JV938062.1:385-404
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA385GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
TSA: Triticum aestivum Ta_Contig50709.ansp mRNA sequence.
JV986703.1:321-340
GGAGGAGAAGAATTCCGGCGGCGCGGCGGA321GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum vulgare subsp. vulgare cv. Morex GSS, clone HVVMRXALLMA0059H20_f.
HF435137.1:178-197
AGAATAGGGGGGGCGGCGCGGCGCGGCGCG178GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR862524.1:658359271-658359290
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA658359271GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR862545.1:646033817-646033836
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA646033817GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR862566.1:653776718-653776737
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA653776718GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR865474.1:647124129-647124148
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA647124129GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR865516.1:668147770-668147789
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA668147770GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6D.
LR865517.1:448585254-448585273
GGAGGAGAAGAATTCCGGCGGCGCGGCGGA448585254GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR865776.1:636619418-636619437
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA636619418GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR877325.1:645904318-645904337
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA645904318GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LR878451.1:654663979-654663998
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA654663979GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
LS992096.1:660563067-660563086
GGAGGGGAAGAATTCCGGCGGCGCGGCGGA660563067GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
OU015737.1:674379188-674379207
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA674379188GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Avena longiglumis genome assembly, chromosome: 6A.
OU342752.1:411528826-411528845
TTGGGACGGTGGTGTCGCAGCACGGCAGCA411528826GCGGTCACAAGTTCTTGGATCCCCTGCTGTAGCCGTAGTACGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
OU963888.1:683020200-683020219
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA683020200GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
OV100753.1:650183723-650183742
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA650183723GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6B.
OW530326.1:650183723-650183742
GTTGGGGAAGAATTCCGGCGGCGCGGCGGA650183723GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6D.
OX637242.1:343581549-343581568
GGAGGAGAAGAATTCCGGCGGCGCGGCGGA343581549GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Triticum aestivum genome assembly, chromosome: 6D.
OX637242.1:343583517-343583536
NNNNNNNNNNNNNNNNNNNNNNNNGGCGGA343583517GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737472.1:371151501-371151520
GAGGAGGGGAAGAATCGGGGGCGCGGCGCG371151501GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Hordeum bulbosum genome assembly, chromosome: 6H_2.
OY737652.1:359118365-359118384
GAGGAGGGGAAGAATCGGGGGCGCGGCGCG359118365GCGGTCACAAGTTCTTGGATCCCCGGGTGTAGCCGTAGTAGGAGAGGTAC
Pieris napi genome assembly, chromosome: 3.
HG993166.1:5464556-5464575
ACTGAAAAAATGTATATTGAAAACAATTAA5464556GCGGTCACAAGTTCTTGGATTATTAGTTTCAAAAGTATCCGTCAAGTAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCGGTCACAAGTTCTTGGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGGTCACAAGTTCTTGGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.274 | 2.265 | search_plus_done; http://172.18.8.135:50400/match?q=GCGGTCACAAGTTCTTGGAT&k=0&no_gap=0&offset=0&limit=50
2.462 | 0.188 | search_minus_done; http://172.18.8.135:50400/match?q=ATCCAAGAACTTGTGACCGC&k=0&no_gap=0&offset=0&limit=0
2.462 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).