GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:48:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

PU3_plate42_M17 PU3 Prunus persica cDNA similar to similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] contains InterProScan IPR000315: Zn-finger, B-box, mRNA sequence.
DY647237.1:274-292
CGAGCTTTGCTCTGTAGAACATGTGATGTT274GCTATACACGCTGCTAATAGCTTGGTGTCAGCTCACCGGAGGTTTTTGC
Pm_0449 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW869023.1:309-327
CGAGCTTTGCTCTGTAGAACATGTGATGTT309GCTATACACGCTGCTAATAGCTTGGTGTCAGCTCACCGGAGGTTTTTGC
Prunus dulcis DNA, pseudomolecule Pd04.
AP019300.1:9232369-9232387
AGAGCTTTGCTCTGTAGAACATGTGATGTT9232369GCTATACACGCTGCTAATAGCTTGGTGTCAGCTCACCGGAGGTTTTTGC
Prunus mume strain hongmei clone P05 SSR marker genomic sequence.
GU458006.1:1-19
1GCTATACACGCTGCTAATAACAACAGGATGTAGCATGGTCATCTGGAGT
Prunus mume strain hongmei clone P06 SSR marker genomic sequence.
GU458007.1:1-19
1GCTATACACGCTGCTAATAACAACAGGATGTAGCATGGTCATCTGGAGT
Prunus persica light-regulated zinc finger protein 1 (LZF1) mRNA, partial cds.
JQ732178.1:9-27
GTGATGTT9GCTATACACGCTGCTAATAGCTTGGTGTCAGCTCACCGGAGGTTTTTGC
Hemaris fuciformis genome assembly, chromosome: 21.
OU015452.1:9303919-9303937
GACCGCATTTTATTTGTCATGAAATCGGTG9303919TATTAGCAGCGTGTATAGCTATGAAACACTGTGCTAAATGTTTTTTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTATACACGCTGCTAATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTATACACGCTGCTAATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.279 | 0.270 | search_plus_done; http://172.18.8.135:50400/match?q=GCTATACACGCTGCTAATA&k=0&no_gap=0&offset=0&limit=50
0.324 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=TATTAGCAGCGTGTATAGC&k=0&no_gap=0&offset=0&limit=44
0.325 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).