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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 03:21:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CA-H12_04_E01 Coffee SSH library 1 Coffea arabica cDNA, mRNA sequence.
CF588611.1:80-100
GTGGTTGTTACCGTGGTTGCTGTGGCGGCG80GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCCG
CGN-681 Pericarp Coffea canephora cDNA clone cccp9b3 5', mRNA sequence.
DV663851.1:31-51
GTTGTTACCATGGTTGCTGTGGCGGCGGCG31GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-1130 Pericarp Coffea canephora cDNA clone cccp27f12 5', mRNA sequence.
DV664101.1:342-362
ATGGTTGTTACCATGGTTGCTGTGGCGGCG342GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-1213 Pericarp Coffea canephora cDNA clone cccp20g6 5', mRNA sequence.
DV664156.1:13-33
GCTGTGGCGGCG13GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-1522 Pericarp Coffea canephora cDNA clone cccp12d12 5', mRNA sequence.
DV664389.1:343-363
GTTGTTACCATGGTTGCTGTGGCGGCGGCG343GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-2422 Pericarp Coffea canephora cDNA clone cccp24j21 5', mRNA sequence.
DV665059.1:344-364
ATGGTTGTTACCATGGTTGCTGTGGCGGCG344GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCACAAGGACGCTG
CGN-3707 Pericarp Coffea canephora cDNA clone cccp25m21 5', mRNA sequence.
DV665997.1:292-312
GTTGTTACCATGGTTGCTGTGGCGGCGGCG292GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-4717 Pericarp Coffea canephora cDNA clone cccp17a4 5', mRNA sequence.
DV666742.1:437-457
GCCATTGTTACCATGGGTGCTGTGGCCACG437GCTATGGAGGCTGCAGATGCTGCACATATGCTG
CGN-4776 Pericarp Coffea canephora cDNA clone cccp11l17 5', mRNA sequence.
DV666787.1:354-374
ATGGTTGTTACCATGGTTGCTGTGGCGGCG354GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-4863 Pericarp Coffea canephora cDNA clone cccp4d12 5', mRNA sequence.
DV666845.1:343-363
ATGGTTGTTACCATGGTTGCTGTGGCGGCG343GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-5346 Pericarp Coffea canephora cDNA clone cccp11o1 5', mRNA sequence.
DV667194.1:340-360
ATGGTTGTTACCATGGTTGCTGTGGCGGCG340GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-6021 Pericarp Coffea canephora cDNA clone cccp28f17 5', mRNA sequence.
DV667684.1:350-370
GTTGTTACCATGGTTGCTGTGGCGGCGGCG350GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-6062 Pericarp Coffea canephora cDNA clone cccp18k11 5', mRNA sequence.
DV667711.1:340-360
ATGGTTGTTACCATGGTTGCTGTGGCGGCG340GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-6116 Pericarp Coffea canephora cDNA clone cccp26m3 5', mRNA sequence.
DV667746.1:317-337
GCTGTTACCATGGCGCCTGTGGCGGAGGCG317GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-6453 Pericarp Coffea canephora cDNA clone cccp30e14 5', mRNA sequence.
DV667997.1:40-60
GTGGTTGTAACCATGGTTGCTGTGGCGGCG40GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-8145 Pericarp Coffea canephora cDNA clone cccp23e16 5', mRNA sequence.
DV672503.1:320-340
GTTGTTACCATGGTTGCTGTGGCGGCGGCG320GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-8297 Pericarp Coffea canephora cDNA clone cccp21p24 5', mRNA sequence.
DV672601.1:317-337
GCCATTGTTACCATGGTTGCTGTGGCCACG317GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-8461 Pericarp Coffea canephora cDNA clone cccp26m7 5', mRNA sequence.
DV672706.1:329-349
GTTGTTACCATGGTTGCTGTGGCGGCGGCG329GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-8541 Pericarp Coffea canephora cDNA clone cccp8c14 5', mRNA sequence.
DV672767.1:338-358
GCCATTGTTACCATGGTTGCTGTGGCCACG338GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-9646 Pericarp Coffea canephora cDNA clone cccp5f21 5', mRNA sequence.
DV673536.1:340-360
ATGGTTGTTACCATGGTTGCTGTGGCGGCG340GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-10114 Pericarp Coffea canephora cDNA clone cccp20f22 5', mRNA sequence.
DV673862.1:332-352
ATGGTTGTTACCATGGTTGCTGTGGCGGCG332GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-11172 Pericarp Coffea canephora cDNA clone cccp27g5 5', mRNA sequence.
DV674577.1:350-370
GTTGTTACCATGGTTGCTGTGGCGGCGGCG350GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-11958 Pericarp Coffea canephora cDNA clone cccp11n10 5', mRNA sequence.
DV675114.1:291-311
GCCATTGTTACCATGGTTGCTGTGGCCACG291GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-12169 Pericarp Coffea canephora cDNA clone cccp10i13 5', mRNA sequence.
DV675267.1:292-312
GTTGTTACCATGGTTGCTGTGGCGGCGGCG292GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-13262 Pericarp Coffea canephora cDNA clone cccp13i8 5', mRNA sequence.
DV676043.1:311-331
GTTGTTACCATGGTTGCTGTGGCGGCGGCG311GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-13543 Pericarp Coffea canephora cDNA clone cccp20m14 5', mRNA sequence.
DV676226.1:320-340
GTTGTTACCATGGTTGCTGTGGCGGCGGCG320GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-13678 Pericarp Coffea canephora cDNA clone cccp15k8 5', mRNA sequence.
DV676319.1:326-346
ATGGTTGTTACCATGGTTGCTGTGGCGGCG326GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-14804 Pericarp Coffea canephora cDNA clone cccp8j23 5', mRNA sequence.
DV677421.1:347-367
ATGGTTGTTACCATGGTTGCTGTGGCGGCG347GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-15417 Pericarp Coffea canephora cDNA clone cccp2b6 5', mRNA sequence.
DV677866.1:171-191
GTTGTTACCATGGTTGCTGTGGCGGCGGCG171GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-15514 Pericarp Coffea canephora cDNA clone cccp9o7 5', mRNA sequence.
DV677944.1:214-234
GTTGTTACCATGGTTGCTGTGGCGGCGGCG214GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACACTG
CGN-15541 Pericarp Coffea canephora cDNA clone cccp10e7 5', mRNA sequence.
DV677967.1:329-349
GTTGTTACCATGGTTGCTGTGGCGGCGGCG329GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-16688 Pericarp Coffea canephora cDNA clone cccp19j8 5', mRNA sequence.
DV678765.1:356-376
GTTGTTACCATGGTTGCTGTGGCGGCGGCG356GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACACTG
CGN-17448 Pericarp Coffea canephora cDNA clone cccp21o13 5', mRNA sequence.
DV679297.1:326-346
GCCATTGTTACCATGGTTGCTGTGGCCACG326GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-26431 Leaf Coffea canephora cDNA clone cccl3c3 5', mRNA sequence.
DV685193.1:335-355
GCCATTGTCACGATGGTTGCTGCGGCCACG335GCTATGGAGGCTGCAGATGCTGCA
CGN-26894 Leaf Coffea canephora cDNA clone cccl1i18 5', mRNA sequence.
DV685540.1:317-337
GCCATTGTTACCATGGTTGCTGTGGCCACG317GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-28456 Leaf Coffea canephora cDNA clone cccl1h18 5', mRNA sequence.
DV686700.1:322-342
GCCATTGTTACCATGGTTGCTGTGGCCACG322GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-29524 Leaf Coffea canephora cDNA clone cccl8l14 5', mRNA sequence.
DV687505.1:345-365
GCCATTGTTACCATGGTTGCTGCGGCCACG345GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-30868 Leaf Coffea canephora cDNA clone cccl9o16 5', mRNA sequence.
DV688263.1:351-371
ATGGTTGTTACCATGGTTGCTGTGGCGGCG351GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-31126 Leaf Coffea canephora cDNA clone cccl10o16 5', mRNA sequence.
DV688451.1:336-356
ATGGTTGCCTCCATGGTTGCTGCGGCGGCG336GCTATGGAGGCTGCAGATGCT
CGN-31210 Leaf Coffea canephora cDNA clone cccl18k10 5', mRNA sequence.
DV688505.1:353-373
ATGGTTGTTACCATGGTTGCTGTGGCGGCG353GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-32301 Leaf Coffea canephora cDNA clone cccl9n16 5', mRNA sequence.
DV689296.1:360-380
ATGGTTGTTACCATGGTTGCTGTGGCGGCG360GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-32471 Leaf Coffea canephora cDNA clone cccl9j6 5', mRNA sequence.
DV689416.1:345-365
GCCATTGTTACCATGGTTGCTGTGGCCACG345GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-33399 Leaf Coffea canephora cDNA clone cccl18j8 5', mRNA sequence.
DV690120.1:179-199
ATGGTTGTTACCATGGTTGCTGTGGCGGCG179GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-34134 Leaf Coffea canephora cDNA clone cccl18o12 5', mRNA sequence.
DV690664.1:340-360
ATGGTTGTTACCATGGTTGCTGTGGCGGCG340GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-35656 Leaf Coffea canephora cDNA clone cccl20l6 5', mRNA sequence.
DV691868.1:287-307
ATGGTTGTCACCATGGTTGCTGTGGCGGCG287GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGTTG
CGN-36058 Leaf Coffea canephora cDNA clone cccl19b1 5', mRNA sequence.
DV692199.1:325-345
GCCATTGTTACCGTGGTTGCTGGGGCCACG325GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-36104 Leaf Coffea canephora cDNA clone cccl20b10 5', mRNA sequence.
DV692235.1:307-327
GCCATTGTTACCATGGTTGCTGTGGCCACG307GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CGN-43196 Leaf Coffea canephora cDNA clone cccl29l10 5', mRNA sequence.
DV697717.1:74-94
GCCATTCCTACCATGGTTGCTGTGGCCACG74GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CC-L01_006_B03 Coffea young leaves Coffea canephora cDNA clone CC-L01_006_B03, mRNA sequence.
EE192151.1:325-345
ATGGTTGTTACCATGGTTGCTGTGGCGGCG325GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
CC-L01_051_F11 Coffea young leaves Coffea canephora cDNA clone CC-L01_051_F11, mRNA sequence.
EE195036.1:337-357
GTTGTTACCATGGTTGCTGTGGCGGCGGCG337GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG
AFP0AAA60YJ23RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO571820.1:368-388
ATGGTTGTTACCATGGTTGCTGTGGCCACG368GCTATGGAGGCTGCAGATGCTGCACATATGCTGGTGAGCCAAAGGACGCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTATGGAGGCTGCAGATGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTATGGAGGCTGCAGATGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
3.370 | 3.361 | search_plus_done; http://172.18.8.135:50400/match?q=GCTATGGAGGCTGCAGATGCT&k=0&no_gap=0&offset=0&limit=50
3.420 | 0.050 | search_minus_done; http://172.18.8.135:50400/match?q=AGCATCTGCAGCCTCCATAGC&k=0&no_gap=0&offset=0&limit=0
3.420 | 0.000 | cgi_end;

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