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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 10:45:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 4 from patent US 5484905.
I17186.1:2560-2580
GTGAACCAAATCACCATGTCGATCATTGAC2560GCTCGGTAATATGATAGTCTTTGATAATATTCTCACTATTAAAGTTTTACT
KBrH119J13 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT011938.1:305-325
GTGAACCAAATCACCATGTCGATCATTGAC305GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
KBrH119J13 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT012054.1:358-378
GTGAACCAAATCACCATGTCGATCATTGAC358GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica rapa mRNA for SRK29, complete cds.
AB008191.1:2573-2593
GTGAACCAAATCACCATGTCGATCATTGAC2573GCTCGGTAATATGATAGTCTTTGGTAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea SRK2-b mRNA, complete cds.
AB024416.1:2557-2577
GTGAACCAAATCACCATGTCGATCATTGAC2557GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTTGT
Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus glycoprotein, partial cds.
AB097116.1:30816-30836
GTGAACCAAATCACCATGTCGATCATTGAC30816GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea S-15 SRK gene for S-locus receptor kinase, complete cds.
AB180903.1:17358-17378
GTGAACCAAATCACCATGTCGATCATTGAC17358GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica rapa SRK40 mRNA for S-receptor kinase, complete cds.
AB211197.1:2560-2580
GTGAACCAAATCACCATGTCGATCATTGAC2560GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTACTAAAGTTTTACT
Brassica napus BnSRK-6 gene for S receptor kinase, complete cds.
AB270772.1:8782-8802
GTGAACCAAATCACCATGTCGATCATTGAC8782GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:47278912-47278932
GTGAACCAAATCACCATGTCGATCATTGAC47278912GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:41274927-41274947
GTGAACCAAATCACCATGTCGATCATTGAC41274927GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea var. italica haplotype BOI1 SRK protein gene, partial cds.
JQ253785.1:1023-1043
GTGAACCAAATCACCATGTCGATCATTGAC1023GCTCGGTAATATGATAGTCTT
Brassica rapa genome, scaffold: A07.
LR031574.1:22491528-22491548
GTGAACCAAATCACCATGTCGATCATTGAC22491528GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:22782668-22782688
GTGAACCAAATCACCATGTCGATCATTGAC22782668GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea mRNA for SRK5 protein, partial.
Y18259.1:2540-2560
GTGAACCAAATCACCATGTCGATCATTGAC2540GCTCGGTAATATGATCGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica oleracea mRNA for SRK15 protein, partial.
Y18260.1:2543-2563
GTGAACCAAATCACCATGTCGATCATTGAC2543GCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:5888762-5888782
AGTAAAACTTTAATAATGAGAATATTACCA5888762AAGACTATCATATTACCGAGCGTCAATGATCGACATGGTGATTTGGTTCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTCGGTAATATGATMGTCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCGGTAATATGATMGTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.163 | 0.154 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCGGTAATATGATMGTCTT&k=0&no_gap=0&offset=0&limit=50
0.186 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=AAGACKATCATATTACCGAGC&k=0&no_gap=0&offset=0&limit=34
0.187 | 0.001 | cgi_end;

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