GGGenome | Results

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2025-04-10 23:19:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:625877-625896

GAGGACTCGGCGGCGGCGCTTGGGTTCGAC625877GCTCTAATGGCGGTTTTCAGAAAGATGGGCGTTTTAGAGGTGAAACAGTG

Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:687951-687970

GAAGACTCGGCGGCGGCCCTTGGGTTCGAA687951GCTCTAATGGCGGTTTTCAGAAAGATGGGCGTTTTAGCGGTGAAACAGTG

Malus x robusta genome assembly, chromosome: 11.
OY720335.1:691107-691126

GAGGACTCGGCGGCGGCGCTTGGGTTCGAC691107GCTCTAATGGCGGTTTTCAGAAAGATGGGCGTTTTAGAGGTGAAACAGTG

Bembecia ichneumoniformis genome assembly, chromosome: 4.
OU342523.1:8816635-8816654

CAAAAGTAACAAAACAAATTAATTTATCGT8816635GCTCTAATGGCGGTTTTCAGTAAAATACTTTGTAGGGTTCATCATGATTC

Dicrocoelium dendriticum genome assembly, chromosome: 1.
OX104063.1:211498623-211498642

CTTTCAGACCAATGTGTATCAGGCGACGTA211498623GCTCTAATGGCGGTTTTCAGTTAGTAATGAAATCGTTCGACGACACCATT

Mdlv3_4035k12.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4035k12 5' similar to TR:Q9SYJ1 Q9SYJ1 PUTATIVE NIFU-LIKE METALLOCLUSTER ASSEMBLY FACTOR, mRNA sequence.
CV883275.1:145-164

CACTGTTTCACCGCTAAAACGCCCATCTTT145CTGAAAACCGCCATTAGAGCTTCGAACCCAAGGGCCGCCGCCGAGTCTTC

Mdas9007B11.g1 Apple_EST_Mdas Malus domestica cDNA similar to ref|NP_567219.1| NifU-related metallocluster assembly factor [Arabidopsis thaliana] gb|AAK62607.1| AT4g01940/T7B11_20 [Arabidopsis thalian
DR996697.1:128-147

CACTGTTTCACCGCTAAAACGCCCATCTTT128CTGAAAACCGCCATTAGAGCTTCGAACCCAAGGGCCGCCGCCGAGTCTTC

Mdfwj2081O17.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_567219.1| NifU-related metallocluster assembly factor [Arabidopsis thaliana] gb|AAK62607.1| AT4g01940/T7B11_20 [Arabidopsis th
GO543425.1:108-127

CACTGTTTCACCGCTAATTCTCCCATCTTT108CTGAAAACCGCCATTAGAGCTTCGAACCCAAGCGCCGCCGCCGAGTCCTC

Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33223093-33223112

CACTGTTTCACCTCTAAAACGCCCATCTTT33223093CTGAAAACCGCCATTAGAGCGTCGAACCCAAGCGCCGCCGCCGAGTCCTC

Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:34083970-34083989

CACTGTTTCACCGCTAAAACGCCCATCTTT34083970CTGAAAACCGCCATTAGAGCTTCGAACCCAAGGGCCGCCGCCGAGTCTTC

Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:33579337-33579356

CACTGTTTCACCGCTAAAACGCCCATCTTT33579337CTGAAAACCGCCATTAGAGCTTCGAACCCAAGGGCCGCCGCCGAGTCTTC

Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:31174952-31174971

CACTGTTTCACCTCTAAAACGCCCATTTTT31174952CTGAAAACCGCCATTAGAGCTTCGAACCCAAGCGCCGCCGCCGAGTCTTC

Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:33178709-33178728

CACTGTTTCACCTCTAAAACGCCCATCTTT33178709CTGAAAACCGCCATTAGAGCGTCGAACCCAAGCGCCGCCGCCGAGTCCTC

Malus domestica genome assembly, chromosome: 17.
OU696693.1:33436130-33436149

CACTGTTTCACCGCTAAAACGCCCATCTTT33436130CTGAAAACCGCCATTAGAGCTTCGAACCCAAGGGCCGCCGCCGAGTCTTC

Malus domestica genome assembly, chromosome: 17.
OU744969.1:33172931-33172950

CACTGTTTCACCGCTAAAACGCCCATCTTT33172931CTGAAAACCGCCATTAGAGCTTCGAACCCAAGTGCCGCCGCCGAGTCTTC

Malus domestica genome assembly, chromosome: 17.
OU745007.1:33325387-33325406

CACTGTTTCACCGCTAAAACGCCCATCTTT33325387CTGAAAACCGCCATTAGAGCTTCGAACCCAAGGGCCGCCGCCGAGTCTTC

Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:38947429-38947448

CACTGTTTCACCTCTAAAACGCCCATCTTT38947429CTGAAAACCGCCATTAGAGCTTCGAACCCAAGCGCCGCCTCCGAGTCTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.121 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCTAATGGCGGTTTTCAG&k=0&no_gap=0&offset=0&limit=50
0.319 | 0.199 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAAAACCGCCATTAGAGC&k=0&no_gap=0&offset=0&limit=45
0.327 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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