GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 20:55:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Marasmius oreades strain 43B chromosome 5.
CP097439.1:868305-868324
CGCGTTCGCAGAAGAGTTGATCGCGTATTG868305GCTCTCGTTCGTTAGAGTTGGTGATCCGAACAAGTTCAAGTTGGCCAGAT
Marasmius oreades strain 43A chromosome 5.
CP097450.1:830972-830991
CGCGTTCGCAGAAGAGTTGATCGCGTATTG830972GCTCTCGTTCGTTAGAGTTGGTGATCCGAACAAGTTCAAGTTGGCCAGAT
39RDBRT_UP_048_F07_22JUL2004_053 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272976.1:11-30
GATATCACAA11CAACTCTAACGAACGAGAGCGAACAGTGAAAAAAGGAGAAGAAGAAGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTCTCGTTCGTTAGAGTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTCTCGTTCGTTAGAGTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.095 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=GCTCTCGTTCGTTAGAGTTG&k=0&no_gap=0&offset=0&limit=50
0.146 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=CAACTCTAACGAACGAGAGC&k=0&no_gap=0&offset=0&limit=48
0.146 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).