GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 06:39:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Daucus carota subsp. sativus cultivar DH1 chromosome 8.
CP093350.1:22759562-22759581
TTCTCATGAGGAGCGCGTTTAAGTGCTTCT22759562GCTGCAGTCTTCTTGCCATTCGATGGAGCAGTAGACATACGCCCACCTGC
Daucus carota isolate Kuroda chromosome 8.
CP125308.1:35073337-35073356
TTCTCATGAGGAGCACGTTTAAGTGCTTCT35073337GCTGCAGTCTTCTTGCCATTCGATGGAGCAGTAGACATACGCCCACCTGC
Hedera helix genome assembly, chromosome: 2.
OX359265.1:46705191-46705210
TTCTCGTGAGGAGCTCGTCGAAGGGCCTCG46705191GCTGCAGTCTTCTTGCCATTAGGTGGTGGAGCGGACATGCGGCCACCTGC
Hedera helix genome assembly, chromosome: 3.
OX359266.1:46373809-46373828
TTTTCGTGAGGAGCTCGTCGTAGGGCCTCG46373809GCTGCAGTCTTCTTGCCATTAGGTGGTGGAGCGGACATGCGACCACCTTC
Hedera helix genome assembly, chromosome: 20.
OX359283.1:27881792-27881811
TTCTCGTGTGGAGCTCTGCGGAGAGCTTCA27881792GCTGCAGTCTTCTTGCCATTAGGCGGAGCAGACATACGCCCACCTGCACC
PG07003F05 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07003F05 5', mRNA sequence.
CN845656.1:119-138
GCAGGTGGCCGCATGTCCGCTCCATCACCG119AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07006G01 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07006G01 5', mRNA sequence.
CN846004.1:115-134
GCAGGTGGCCGCATGTCCGCTCCATCACCG115AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07005D05 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07005D05 5', mRNA sequence.
CN846053.1:117-136
GCAGGTGGCCGCATGTCCGCTCCATCACCG117AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07010D03 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07010D03 5', mRNA sequence.
CN846224.1:115-134
GCAGGTGGCCGCATGTCCGCTCCATCACCG115AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07016G11 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07016G11 5', mRNA sequence.
CN846397.1:119-138
GCAGGTGGCCGCATGTCCGCTCCATCACCG119AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07015F01 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07015F01 5', mRNA sequence.
CN846454.1:123-142
GCAGGTGGCCGCATGTCCGCTCCATCACCG123AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07019C12 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07019C12 5', mRNA sequence.
CN846708.1:11-30
TCCATCAACG11AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07003G03 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07003G03 5', mRNA sequence.
CN848085.1:117-136
GCAGGTGGCCGCATGTCCGCTCCATCACCG117AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07028G11 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07028G11 5', mRNA sequence.
CN848388.1:113-132
GCAGGTGGCCGCATGTCCGCTCCATCACCG113AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
PG07030H10 Ginseng cDNA library from MeJA treated hairy root Panax ginseng cDNA clone PG07030H10 5', mRNA sequence.
CN848510.1:119-138
GCAGGTGGCCGCATGTCCGCTCCATCACCG119AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
gonad_EST03060 Embryonic gonad cDNA Library Gallus gallus cDNA 5', mRNA sequence.
CV855584.1:128-147
GCAGGTGGCCGCATGTCCGCTCCGCCACCG128AATGGCAAGAAGACTGCAGCAGAGGCCCTTCGACGAGCTCCTCACGAGAA
KYERRC001_08-C10-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS076697.1:122-141
GCAGGTGGCCGCATGTCCGCTCCATCACCG122AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_10-F08-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS076903.1:121-140
GCAGGTGGCCGCATGTCCGCTCCATCACCG121AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_15-H04-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS077367.1:118-137
GCAGGTGGCCGCATGTCCGCTCCATCACCG118AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_26-C03-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS078331.1:125-144
GCAGGTGGCCGCATGTCCGCTCCATCACCG125AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_38-C09-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS079470.1:121-140
GCAGGTGGCCGCATGTCCGCTCCATCACCG121AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
KYERRC001_41-E11-T3.ab1 Panax ginseng in vitro-cultured adventitious root cDNA library Panax ginseng cDNA, mRNA sequence.
HS079778.1:121-140
GCAGGTGGCCGCATGTCCGCTCCATCACCG121AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA
TSA: Panax ginseng strain Shi Zhu Shen contig05779.Pagi mRNA sequence.
JI153892.1:11-30
TCCATCACCG11AATGGCAAGAAGACTGCAGCCGAGGCCCTTCGACGAGCGCCTCACGAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTGCAGTCTTCTTGCCATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGCAGTCTTCTTGCCATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGCAGTCTTCTTGCCATT&k=0&no_gap=0&offset=0&limit=50
1.343 | 1.251 | search_minus_done; http://172.18.8.135:50400/match?q=AATGGCAAGAAGACTGCAGC&k=0&no_gap=0&offset=0&limit=45
1.355 | 0.012 | cgi_end;

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