GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:40:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:18459490-18459509
GGCGCTGGCTTGCGACGTCGTTTGGGAGGT18459490GCTGTCACGTTGGGTGTATGGGAAAACGGTCGAGAAGGTGGCGCCGGTGT
Othius punctulatus genome assembly, chromosome: 2.
OX638139.1:12027975-12027994
CGAGTGTAGCCATTAAATGATTGGCAATTT12027975GCTGTCACGTTGGGTGTATGCAAATAATTTCCCTATAGTTTAGAACGGTT
UCRCS01_04cf06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cf06, mRNA sequence.
CB292527.1:43-62
ACACCGGCGCCACCTTCTCGACCGTTTTCC43CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
USDA-FP_10805 Rough Lemon seedling root Citrus jambhiri cDNA clone RLR05_H07 5', mRNA sequence.
CO912711.1:153-172
ACACCGGCGCCACCTTCTCGACCGTTTTCC153CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
UCRCS11_03H17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0003H17, mRNA sequence.
DN619107.1:441-460
ACACCGGCGCCACCTTCTCGACCGTTTTCC441CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
IC0AAA42BG06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276912.1:406-425
ACACCGGCGCCACCTTCTCGACCGTTTTCC406CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
CA26-C1-002-003-D09-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence.
EY842585.1:115-134
ACACCGGCGCCACCTTCTCGACCGTTTTCC115CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC
IC0AAA42BG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42BG06, mRNA sequence.
FC912428.1:406-425
ACACCGGCGCCACCTTCTCGACCGTTTTCC406CATACACCCAACGTGACAGCACCTCCCAAACGACGTCGCAAGCCAGCGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTGTCACGTTGGGTGTATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTGTCACGTTGGGTGTATG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=GCTGTCACGTTGGGTGTATG&k=0&no_gap=0&offset=0&limit=50
0.386 | 0.293 | search_minus_done; http://172.18.8.135:50400/match?q=CATACACCCAACGTGACAGC&k=0&no_gap=0&offset=0&limit=48
0.390 | 0.004 | cgi_end;

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