GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:36:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB084F02F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB084F02, genomic survey sequence.
DX073829.1:635-654
AGACTGAATCCAGTATACAGTGCGAGTTTT635GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGATCTAT
KBrB110J10F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB110J10, genomic survey sequence.
ED522661.1:677-696
AGACTGAATCCAGTATACAGTGCGAGTTTT677GCTTCTGAAGAGCACTCCTAATACATTATGAATTTCATATGAAGTTCTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084F02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189487.2:660-679
AGACTGAATCCAGTATACAGTGCGAGTTTT660GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001F19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189625.2:138009-138028
AGACTGAATCCAGTATACAGTGCGAGTTTT138009GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH026E14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC234743.1:98768-98787
AGACTGAATCCAGTATACAGTGCGAGTTTT98768GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59352061-59352080
AGACTGAATCCAGTATACAGTGCGAGTTTT59352061GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:43214745-43214764
AGACTGAATCCAGTATACAGTGCGAGTTTT43214745GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:29010461-29010480
AGACTGAATCCAGTATACAGTGCGAGTTTT29010461GCTTCTGAAGAGCACTCCTAATACATTATGAATTCAATATGAAGTTTCTA
Brassica rapa genome, scaffold: A09.
LR031568.1:47543032-47543051
AGACTGAATCCAGTATACAGTGCGAGTTTT47543032GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:58009621-58009640
AGACTGAATCCAGTATACAGTGCGAGTTTT58009621GCTTCTGAAGAGCACTCCTAATACATTATGAATTCCATATGAAGTTCTAT
Cyclopterus lumpus genome assembly, chromosome: 11.
OY735158.1:4234321-4234340
GATGCGTCTCTGGCAAATCTGCTAACTTTG4234321TAGGAGTGCTCTTCAGAAGCGTGCCCCTTTAACTCAGAAACTCAGTGACA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:12808045-12808064
TAGAAACTTCATATTGAATTCATAATGTAT12808045TAGGAGTGCTCTTCAGAAGCAAAACTCGCACTGTATACTGGATTCAGTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTTCTGAAGAGCACTCCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTCTGAAGAGCACTCCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.154 | 0.145 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTCTGAAGAGCACTCCTA&k=0&no_gap=0&offset=0&limit=50
0.183 | 0.029 | search_minus_done; http://172.18.8.135:50400/match?q=TAGGAGTGCTCTTCAGAAGC&k=0&no_gap=0&offset=0&limit=40
0.185 | 0.001 | cgi_end;

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