GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 03:27:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acomys percivali genome assembly, chromosome: 3.
OU015744.1:39458074-39458093
AGGACTGGGTGTGCATAAACTATGCTACAT39458074GCTTGTGAGGTGGCTTGTAAGTTGCTTAGGGATAAGGGGAACACTGGCTC
Microcaecilia unicolor genome assembly, chromosome: 2.
LR594633.1:519958753-519958772
CAAATGTTTCTGGACTGATGGACTAACACT519958753GCTTGTGAGGTGGCTTGTAAGCAGCATTCATCCATTAGCATGGGAGTCAG
Microcaecilia unicolor genome assembly, chromosome: 3.
LR594634.1:173783326-173783345
CTGATGCTTCCAGGCTGTTTGATTAACATA173783326GCTTGTGAGGTGGCTTGTAAACAGTGCTATTCATTTGCCACTGGAGTCGG
Microcaecilia unicolor genome assembly, chromosome: 7.
LR594638.1:126995319-126995338
CTGATGCTCCCCAGCACATAGAATAATGCT126995319GCTTGTGAGGTGGCTTGTAAGCAGCGTTATTTGTTTACCACGGGATTCAG
Geotrypetes seraphini genome assembly, chromosome: 3.
LR699148.1:89801813-89801832
CCCAGTGTTCCTGGGTAGCATAATAATGCT89801813GCTTGTGAGGTGGCTTGTAAGCTGCATTATCCTCTTAGCACAGGAGTCAG
pOP-EO04467_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04467 5', mRNA sequence.
EY409880.1:258-277
ACAGCAACCCTCTCTAGTCAGTGGATGGTG258GCTTGTGAGGTGGCTTGTAAGGTGGCTTGTAAGGTCCTGGCGGCTTCACG
EG-E21_002_C09 embsomSSHE2, Early somatic embryos2 (SSH) no BAP/BAP Elaeis guineensis cDNA clone EG-E21_002_C09, mRNA sequence.
JK669558.1:207-226
ACAGCAACCCTCTCTAGTCAGTGGATGGTG207GCTTGTGAGGTGGCTTGTAAGGTCCTGGCGGCTTCACGTGCACCGGTGGC
Elaeis guineensis EST, clone (6lib)_isotig35016.
LM630510.1:273-292
ACAGCAACCCTCTCTAGTCAGTGGATGGTG273GCTTGTGAGGTGGCTTGTAAGGTCCTGGCGGCTTCACGTGCACCGGTGGC
TSA: Elaeis guineensis isotig09541.Elguifruit mRNA sequence.
JO096768.1:255-274
ACAGCAACCCTCTCTAGTCAGTGGATGGTG255GCTTGTGAGGTGGCTTGTAAGGTCCTGGCGGCTTCACGTGCACCGGTGGC
TSA: Rhynchophorus ferrugineus contig06365.Rhfeelpa mRNA sequence.
JR473828.1:283-302
GGTGGTCAGCGGACGGTGGCTTGTGAGGTG283GCTTGTGAGGTGGCTTGTAAGGTCCCGGCGGCTTCACATGCACCGGTGGC
Triticum aestivum genome assembly, chromosome: 2A.
LR865482.1:161010858-161010877
TGCCGAGCCGATTCGAAGCAGCTACTTCGG161010858GCTTGTGAGGTGGCTTGTAAGCGCTTGCCCTTGACTTGACATCATCAAGC
Triticum aestivum genome assembly, chromosome: 2A.
LR878438.1:154795127-154795146
TGCCGAGCCGATTCGAAGCAGCTACTTCGG154795127GCTTGTGAGGTGGCTTGTAAGCGCTTGCCCTTGACTTGACATCATCAAGC
Triticum aestivum genome assembly, chromosome: 2A.
LS992083.1:156177708-156177727
TGCCGAGCCGATTCGAAGCAGCTACTTCGG156177708GCTTGTGAGGTGGCTTGTAAGCGCTTGCCCTTGACTTGACATCATCAAGC
Triticum monococcum genome assembly, chromosome: 7A.
OY737856.1:563163023-563163042
TGCCGAGCCGATTCCAAGAAGCTACTTCGG563163023GCTTGTGAGGTGGCTTGTAAGCGCTTGCCATCAACTTGACGTCATCAAGC
Triticum monococcum genome assembly, chromosome: 3A.
OY737860.1:228515579-228515598
TGCCGAGCCGATTCCAAGCAGCTACTTCGG228515579GCTTGTGAGGTGGCTTGTAAGCGTTTGCCCTCGACTTGACGTCATCAAGT
Triticum monococcum genome assembly, chromosome: 7A.
OY737864.1:558508713-558508732
TGCCGAGCCGATTCCAAGCAGCTACTTCAG558508713GCTTGTGAGGTGGCTTGTAAGCGCTTGCCATCAACTTGACGTCATCAAGC
Carpatolechia fugitivella genome assembly, chromosome: 14.
OX579659.1:15936868-15936887
ATCAGAAGCCATTTGGTGGCTTGTGAGGTG15936868GCTTGTGAGGTGGCTTGTAAATATTGGCATAATGCTACTGACGCTATAAA
Microcaecilia unicolor genome assembly, chromosome: 3.
LR594634.1:65808948-65808967
CTGAATCCCATTTTAAAAGAATAATGCTGT65808948TTACAAGCCACCTCACAAGCAGCATTATTCCCGTTGGCCTTGGAGCATTA
Microcaecilia unicolor genome assembly, chromosome: 5.
LR594636.1:107776748-107776767
CTGAATACTAGGATTAAAAAATAACCCTGC107776748TTACAAGCCACCTCACAAGCAGTATTATTCTAAAGCCATGGACTGATGCT
Geotrypetes seraphini genome assembly, chromosome: 4.
LR699149.1:132485600-132485619
CTGAATCCTGTGGTAAAAGGATAATGCTGC132485600TTACAAGCCACCTCACAAGCAGCATTATTCTAAGTGCCTATGAACATCAG
Geotrypetes seraphini genome assembly, chromosome: 7.
LR699152.1:73116336-73116355
ATTCATCTAGCAAAAGCCAAAGTAAAACAC73116336TTACAAGCCACCTCACAAGCAACATCATTAGACCTGTCAAGTCTCCGTTT
OPSC00975 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 195-C7-T3.seq, mRNA sequence.
EL689201.1:294-313
GCCACCGGTGCACGTGAAGCCGCCGGGACC294TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCCGT
OPR03115 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A2247.seq, mRNA sequence.
EL693072.1:330-349
CGTGAAGCCGCCAGGACCTTACAAGCCACC330TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-EAP01121 EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP01121, mRNA sequence.
ES324081.1:35-54
GCCACCGGTGCACGTGAAGCCGACAGGACC35TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CAP00261_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00261 5', mRNA sequence.
EY396137.1:318-337
GCCACCGGTGCACGTGAAGCCGCCAGGACC318TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CAP00277_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00277 5', mRNA sequence.
EY396229.1:318-337
GCCACCGGTGCACGTGAAGCCGCCGGGACC318TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCCGT
pOP-CAP00111_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00111 5', mRNA sequence.
EY396240.1:229-248
GCCACCGGTGCACGTGAAGCCGCCAGGACC229TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CAP00239_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00239 5', mRNA sequence.
EY396262.1:299-318
GCCACCGGTGCACGTGAAGCCGCCAGGACC299TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CAP00187_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00187 5', mRNA sequence.
EY396299.1:309-328
GCCACCGGTGCACGTGAAGCCGCCAGGACC309TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CAP00072_EST_C_1_pBSK_SK CA (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CAP00072 5', mRNA sequence.
EY396324.1:332-351
GCCACCGGTGCACGTGAAGCCGCCAGGACC332TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00263_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00263 5', mRNA sequence.
EY396386.1:318-337
GCCACCGGTGCACGTGAAGCCGCCGGGACC318TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCCGT
pOP-CBP00083_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00083 5', mRNA sequence.
EY396397.1:356-375
GCCACCGGTGCACGTGAAGCCGCCAGGACC356TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00041_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00041 5', mRNA sequence.
EY396399.1:276-295
CGTGAAGCCGCCAGGACCTTACAAGCCACC276TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00101_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00101 5', mRNA sequence.
EY396427.1:281-300
CGTGAAGCCGCCAGGACCTTACAAGCCACC281TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00095_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00095 5', mRNA sequence.
EY396433.1:326-345
CGTGAAGCCGCCAGGACCTTACAAGCCACC326TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00051_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00051 5', mRNA sequence.
EY396460.1:308-327
GCCACCGGTGCACGTGAAGCCGCCAGGACC308TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00076_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00076 5', mRNA sequence.
EY396466.1:288-307
GCCACCGGTGCACGTGAAGCCGCCAGGACC288TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00237_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00237 5', mRNA sequence.
EY396487.1:294-313
GCCACCGGTGCACGTGAAGCCGCCAGGACC294TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00063_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00063 5', mRNA sequence.
EY396560.1:314-333
GCCACCGGTGCACGTGAAGCCGCCAGGACC314TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CBP00243_EST_C_1_pBSK_SK CB (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CBP00243 5', mRNA sequence.
EY396589.1:291-310
CGTGAAACCGCCAGGACCTTACAAGCCACC291TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CEO02827_EST_C_1_pSK_SK CEO (Oil Palm Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CEO02827 5', mRNA sequence.
EY397232.1:297-316
GCCACCGGTGCACGTGAAGCCGCCAGGACC297TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CEO01463_EST_C_1_pSK_SK CEO (Oil Palm Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CEO01463 5', mRNA sequence.
EY397654.1:321-340
CGTGAAGCCGCCAGGACCTTACAAGCCACC321TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CEO02696_EST_C_1_pSK_SK CEO (Oil Palm Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CEO02696 5', mRNA sequence.
EY398763.1:98-117
CGTGAAGCCGCCAGGACCTTACAAGCCACC98TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CEO00549_EST_C_1_pSK_SK CEO (Oil Palm Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CEO00549 5', mRNA sequence.
EY399299.1:76-95
CGTGAAGCCGCCAGGACCTTACAAGCCACC76TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNIP00547_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00547 5', mRNA sequence.
EY403386.1:108-127
GCCACCGGTGCACGTGAAGCCGCCAGGACC108TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNIP04028_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP04028 5', mRNA sequence.
EY403509.1:142-161
CGTGAAGCCGCCAGGACCTTACAAGCCACC142TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNIP00485_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00485 5', mRNA sequence.
EY403525.1:97-116
CGTGAAGCCGCCAGGACCTTACAAGCCACC97TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNI01401_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01401 5', mRNA sequence.
EY403768.1:314-333
GCCACCGGTGCACGTGAAGCCGCCAGGACC314TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNI01369_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01369 5', mRNA sequence.
EY403900.1:192-211
GCCACCGGTGCACGTGAAGCCGCCAGGACC192TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNI01627_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01627 5', mRNA sequence.
EY404144.1:115-134
CGTGAAGCCGCCAGGACCTTACAAGCCACC115TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNIP00341_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNIP00341 5', mRNA sequence.
EY404377.1:215-234
GCCACCGGTGCACGTGAAGCCGCCAGGACC215TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNI01733_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01733 5', mRNA sequence.
EY404577.1:61-80
GCCACCGGTGCACGTGAAGCCGCCAGGACC61TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
pOP-CNI01244_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01244 5', mRNA sequence.
EY404671.1:95-114
GCCACCGGTGCACGTGAAGCCGCCGGGACC95TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCCGT
pOP-CNI01693_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI01693 5', mRNA sequence.
EY404841.1:42-61
GCCACCGGTGCACGTGAAGCCGCCAGGACC42TTACAAGCCACCTCACAAGCCACCATCCACTGACTAGAGAGGGTTGCTGT
Elaeis guineensis clone sEg00054 microsatellite sequence.
MT682199.1:51-70
GCCACCGGTGCACGTGAAGCCGCCAGGACC51TTACAAGCCACCTCACAAGCCACCATCCACTGACTAAAGAGGGTTGCTGT
Triticum monococcum genome assembly, chromosome: 4A.
OY737861.1:574221978-574221997
GCTTGATGACGTCAAGTTGAGGTCAAGCAC574221978TTACAAGCCACCTCACAAGCCCGAAGTTACTGCTTGGAATCGGCTGGGCA
Triticum timopheevii genome assembly, chromosome: 2At.
OY997263.1:403738375-403738394
GCTTGATGACGTCAAGTCGAGGGCAAGCGC403738375TTACAAGCCACCTCACAAGCCCGAAGTAGCTGCTTGGAATCGGCTCGGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTTGTGAGGTGGCTTGTAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTGTGAGGTGGCTTGTAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.420 | 0.411 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTGTGAGGTGGCTTGTAA&k=0&no_gap=0&offset=0&limit=50
2.588 | 2.167 | search_minus_done; http://172.18.8.135:50400/match?q=TTACAAGCCACCTCACAAGC&k=0&no_gap=0&offset=0&limit=33
2.613 | 0.026 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).