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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 21:14:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Apteryx australis mantelli genome assembly, scaffold: scaffold132.
LK065216.1:2359914-2359931
AGGCCTTGAAGATTGGACTCCCACTCTCCT2359914GCTTTCCAGACTACGGTAGGATGAGATTTTTAATTTAAGGAATCAGCG
0082042 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV158180.1:641-658
ATCAGAAAGAGACTTTGTGAAAACTTCAAG641GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCTGAGGTGCCAGC
Brassica rapa subsp. pekinensis mRNA, clone: BBRAF44F09, 3'-end sequence.
FY427823.1:809-826
ATCAGAAAGAGACTTTGTGAAAACTTCAAG809GCTTTCCAGACTACGGTAAGACTCAAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_13786.
FX659727.1:826-843
ATCACAAAGAGATTGGGTAAACACTTCAAG826GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTCCCAAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_19448.
FX695581.1:735-752
ATCAGAAAGAGACTTTGTGAAAACTTCAAG735GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTTCCGAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6462.
FX730779.1:820-837
ATCACAAAGAGATTGGGTAAACACTTCAAG820GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTCCCAAC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB085J21, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.
AC232529.1:102614-102631
ATCAGAAAGAGACTTTGTGAAAACTTCAAG102614GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTTCCGAC
Capsicum annuum Takanotsume DNA, chromosome 1, sequence.
AP026696.1:175648581-175648598
AACTCTTTATTCTGAGATCATGTTTTAGAG175648581GCTTTCCAGACTACGGTATGTTCAGATAGTTTATATAAGTTTTATTTT
Capsicum annuum Takanotsume DNA, chromosome 12, sequence.
AP026707.1:222812237-222812254
ACTCCTTATTCAGACAGTAATATTTTAGAG222812237GCTTTCCAGACTACGGTATGTTTAGATAGCTTATTTCAGTTGTTTTGG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24705848-24705865
ATCAGAAAGAGACTTTGTGAAAACTTCAAG24705848GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTTCCAGC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 1.
CP124731.1:174745920-174745937
AACTCTTTATTCTGAGATCATGTTTTAGAG174745920GCTTTCCAGACTACGGTATGTTCAGATAGTTTATATAAGTTTTATTTT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:24668658-24668675
ATCAGAAAGAGACTTTGTGAAAACTTCAAG24668658GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCTGAGGTGCCAGC
Brassica rapa genome, scaffold: A03.
LR031572.1:24305678-24305695
ATCAGAAAGAGACTTTGTGAAAACTTCAAG24305678GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTTCCGAC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51315135-51315152
ATCAGAAAGAGACTTTGTGAAAACTTCAAG51315135GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCTGAGGTGCCAGC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24433539-24433556
ATCAGAAAGAGACTTTGTGAAAACTTCAAG24433539GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTTCCGAC
Phragmites australis genome assembly, chromosome: 2.
OY282613.1:48266122-48266139
GTCAAGCCGTGTGAGAGTTAGGTATAATGT48266122GCTTTCCAGACTACGGTATTGAGTGGGATCCAGCACCGGAGGAGAATT
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:35783482-35783499
ATCACAAAGAGATTGGGTAAACACTTCAAG35783482GCTTTCCAGACTACGGTAAGACTCAAGAACAACACCAGAGGTCCCAAC
Paenibacillus odorifer strain DSM 15391, complete genome.
CP009428.1:155193-155210
CCGCTGAAACTCCGCAATAGCTTGATACTG155193GCTTTCCAGACTACGGTAGACGGAAATATAAATCGGCAGCAGCTGCTT
Scrobipalpa costella genome assembly, chromosome: 20.
OX463315.1:12650808-12650825
ATTTTAAAAACATATCATTTAACGAGAATA12650808GCTTTCCAGACTACGGTAAATATTAAAAAAGTTCATGAGATTTTTTCA
Zootoca vivipara genome assembly, chromosome: 8.
OY735909.1:8634921-8634938
TGTTCTATTCTCTGGATCTCTGGGACAAGG8634921TACCGTAGTCTGGAAAGCTAGATGGATATAAAACATACAGACCAAGAA
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a001L22_T7.
AM388219.1:141-158
GCTGGCACCTCAGGTGTTGTTCTTGAGTCT141TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACAAAGTCTCTTTCTGAT
0108017 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV226091.1:101-118
GCTGGCACCTCAGGTGTTGTTCTTGAGTCT101TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACAAAGTCTCTTTCTGAT
RS2EY71TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD569103.1:89-106
GTTGGGACCTCTGGTGTTGTTCTTGAGTCT89TACCGTAGTCTGGAAAGCCTTGAAGCGTTTACCCAATCTCTTTGTGAT
RS2FX47TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD572025.1:343-360
GTTGGGACCTCTGGTGTTGTTCTTGAGTCT343TACCGTAGTCTGGAAAGCCTTGAAGTGTTTACCCAATCTCTTTGTGAT
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF05A17, 5'-end sequence.
FY065154.1:400-417
GTCGGAACCTCTGGTGTTGTTCTTGAGTCT400TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACAAAGTCTCTTTCTGAT
TSA: Chorispora bungeana CK_02511 mRNA sequence.
JW990577.1:308-325
AACTCTGACTCTGAAGTTGTTCTTGAGTCT308TACCGTAGTCTGGAAAGCCTCGAAATTTTCACGAGATCTCTTTCTAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:58214-58231
GTCGGAACCTCTGGTGTTGTTCTTGAGTCT58214TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACAAAGTCTCTTTCTGAT
Aspergillus puulaauensis MK2 DNA, chromosome 1, nearly complete sequence.
AP024443.1:5464896-5464913
GGCTTCGGTCTGGGCTTCCTCCTGGGCGAC5464896TACCGTAGTCTGGAAAGCGCGCGTCGTCTGCAGCTGGAGGCCAGAGAG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 12.
CP124720.1:39403727-39403744
CCAAAACAACTGAAATAAGCTATCTAAACA39403727TACCGTAGTCTGGAAAGCCTCTAAAATATTACTGTCTGAATAAGGAGT
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:7834656-7834673
GTTGGGACCTCTGGTGTTGTTCTTGAGTCT7834656TACCGTAGTCTGGAAAGCCTTGAAGTGTTTACCCAATCTCTTTGTGAT
Arabis alpina genome assembly, chromosome: 6.
LT669793.1:23481679-23481696
GTTGGAACGTTTGATGTTGTTCTTGAGTCT23481679TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACAAAATCTATTTGTAAT
Arabis alpina genome assembly, chromosome: 7.
LT669794.1:47601467-47601484
GTTGGAACGTCTGATGTTATTCTGGAGTCT47601467TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACGAAATCTCTTTGTAAT
Thlaspi arvense genome assembly, chromosome: 7.
OU466863.1:8996828-8996845
GTTGGCACGCCTGGTGTTGTTCTTGAGTCT8996828TACCGTAGTCTGGAAAGCCTTGAAGTTTTTACGAAATCTCTTTCGAAT
Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:8871374-8871391
GTTGGAACTTCTGATGTTTTTCTTGAGTCT8871374TACCGTAGTCTGGAAAGCCTTGAAGTTTTTACAAAATCTCTTTCGAAC
Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:8881619-8881636
GTTGGAACTTCTGATGTTTTTCTTGAGTCT8881619TACCGTAGTCTGGAAAGCCTTGAAGTTTTTACAAAATCTCTTTCGAAC
Nasturtium officinale genome assembly, chromosome: 5.
OY978503.1:6310889-6310906
GTTGGCACCTCTGATGTTTTTCTTGAGTCT6310889TACCGTAGTCTGGAAAGCCTTGAAATTTTTACGAAAGCTTTGTCTAAT
Lepidium didymum genome assembly, chromosome: 8.
OY986980.1:7767010-7767027
GTTGGAACTTCTGATGTTGTTCTTGAGTCT7767010TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACGAAATCTCTTTCGAAC
Lepidium didymum genome assembly, chromosome: 4.
OY986994.1:8079285-8079302
GTTGGAACTTCTGATGTTGTTCTTGAGTCT8079285TACCGTAGTCTGGAAAGCCTTGAAGTTTTCACGAAATCTCTTTCGAAC
Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:7767080-7767097
GTTGGAACCTCTGATGTTTTTCTTGAGTCT7767080TACCGTAGTCTGGAAAGCCTTGAAGTTTTTACAAAATCTCTTTCAAAT
Leptopterna dolabrata genome assembly, chromosome: 2.
OX940976.1:69618212-69618229
TTTAATTGCAATTGTTTATCACCGTTAATC69618212TACCGTAGTCTGGAAAGCTTCTGGTTAGACACATATTTTCGTACCATA

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