GGGenome | Results

2025-04-16 21:36:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

RTWW3_12_H12.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_12_H12_A022 3', mRNA sequence.
CF479743.1:450-469

CTTGCCACAAGAAGGGGTGAAGAAATTCCT450GCTTTGATATATGAGTCTCGACCTGCAGTCCATGCAAATGCAACATGGGA

GQ03506.B7_L09 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03506_L09 5', mRNA sequence.
EX403069.1:130-149

CTTGCCACAAGAAGGGGCGAAGAACTTCCT130GCTTTGATATATGAGTCTCGACCTGCAGTCCATGCCAATGCTCCATATCT

Picea glauca clone GQ03506_L09 mRNA sequence.
BT114029.1:130-149

CTTGCCACAAGAAGGGGCGAAGAACTTCCT130GCTTTGATATATGAGTCTCGACCTGCAGTCCATGCCAATGCTCCATATCT

Harpalus rubripes genome assembly, chromosome: 4.
OY720451.1:27813231-27813250

ATGAAGTGCAATGCAGTGTTAGCATGGGGA27813231CGAGACTCATATATCAAAGCTTTGTGAAGTCGCCGATACTGAGCTTGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTTGATATATGAGTCTCG&k=0&no_gap=0&offset=0&limit=50
0.200 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CGAGACTCATATATCAAAGC&k=0&no_gap=0&offset=0&limit=47
0.201 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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