GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:40:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

10-L107086-1033-077-D04-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-077-D04 5', genomic survey sequence.
JY304714.1:11-29
GATTTTCGAA11GCTTTGGAACTTCGGCGTGGAGGCGGAGGCGTTCGTCGGCGAAGCAGCG
E012678-024-020-C01-SP6 MPIZ-ADIS-024-storage root Beta vulgaris cDNA clone 024-020-C01 5-PRIME, mRNA sequence.
BQ589879.1:339-357
ATCTGCTTCGCCGGAGAATGCCTCCGCCTA339CACGCCGAAGTTCCAAAGCTTAGAATATCTCCCTCGACCCCTCTGTCTC
TSA: Beta vulgaris Locus_8175_Transcript_1/8_Confidence_0.204_Length_740 mRNA sequence.
JP500153.1:337-355
AGCTGCTTCGCCGGTGAATGCCTCCGCCTC337CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTCTGTTTC
TSA: Beta vulgaris Locus_8175_Transcript_3/8_Confidence_0.143_Length_578 mRNA sequence.
JP500154.1:337-355
AGCTGCTTCGCCGGTGAATGCCTCCGCCTC337CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTCTGTTTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:20897304-20897322
AGCTGCTTCGCCGGTGAATGCCTCCGCCTC20897304CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTCTGTTTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:49049462-49049480
CGCTGCTTCACCGACGAACGCCTCCGCTTC49049462CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTATGTTTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392553.1:49051919-49051937
CGCTGCTTCGCCGACGAACGCCTCCGCCTC49051919CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTATGTTTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:18996746-18996764
AGCTGCTTCGCCGGTGAATGCCTCCGCCTC18996746CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTCTGTTTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:45159500-45159518
CGCTGCTTCACCGACGAACGCCTCCGCTTC45159500CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTATGTTTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 7.
OX392562.1:45161957-45161975
CGCTGCTTCGCCGACGAACGCCTCCGCCTC45161957CACGCCGAAGTTCCAAAGCTTCGAAAATCTCCCTCGACCCCTATGTTTC
Piscinibacter sp. XHJ-5 chromosome, complete genome.
CP123228.1:6359186-6359204
GCCGGCGTCGCGGATGCGCTCGGCGTGCTT6359186CACGCCGAAGTTCCAAAGCCGGCGCAGGTAGCGGTGCGAGCCTTCCGCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCTTTGGAACTTCGGCGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCTTTGGAACTTCGGCGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=GCTTTGGAACTTCGGCGTG&k=0&no_gap=0&offset=0&limit=50
0.177 | 0.049 | search_minus_done; http://172.18.8.135:50400/match?q=CACGCCGAAGTTCCAAAGC&k=0&no_gap=0&offset=0&limit=49
0.183 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).