GGGenome | Results

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2025-04-14 16:47:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Pyrus communis mRNA, contig: lc34061.
FX641958.1:157-176

ATTGTCCTTTAATTGTCACATTTTTGTATG157GGAAATGCAGGGTTGACAGGATTGATCTCTTTAAACGTATCAAATTCTCG

Pan troglodytes clone CH251-514B7, WORKING DRAFT SEQUENCE.
AC280488.1:156664-156683

TTCCCTGCCCACCCAGGCAGCTGTCCCAAG156664GGAAATGCAGGGTTGACAGGGCTAGCCTGAAGGCACATCGCCCTCTCTCA

Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:8048832-8048851

CGAGAATTTGATACGTTTAAAGAGATCAAT8048832CCTGTCAACCCTGCATTTCCCATAGAAAAGTGTGACAATTAAAAGATAAT

Malus x robusta genome assembly, chromosome: 11.
OY720335.1:7850678-7850697

CGAGAATTTGATACGTTTAAAGAGATCAAT7850678CCTGTCAACCCTGCATTTCCCATAGAAAAGTGTGACAATTAAAAGATAAT

Pyrus communis genome assembly, chromosome: 11.
OY757078.1:5989561-5989580

CGAGAATTTGATACGTTTAAAGAGATCAAT5989561CCTGTCAACCCTGCATTTCCCATACAAAAATGTGACAATTAAACGATAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.221 | 0.211 | search_plus_done; http://172.18.8.135:50400/match?q=GGAAATGCAGGGTTGACAGG&k=0&no_gap=0&offset=0&limit=50
0.272 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=CCTGTCAACCCTGCATTTCC&k=0&no_gap=0&offset=0&limit=48
0.274 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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