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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:45:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CMCMBd0210B24f CMCMBd Chinese Chestnut BAC Library (EcoRI) Castanea mollissima genomic, genomic survey sequence.
KG017717.1:85-104
TCTTCTTGGAATGGAATTGTTTGCAATGGT85GGAAATGTTGCTGGGGTTGTTCTTGATAACTTAGGTCTGTCTGCTGATGT
Quercus dentata isolate Qdleaves-2020 chromosome 5.
CP116448.1:67921506-67921525
TCTTCTTGGAATGGAATTGTTTGCAATGGT67921506GGAAATGTTGCTGGGGTTGTTCTTGATAACTTAGGTCTGTCTGCTGATGT
Quercus dentata isolate Qdleaves-2020 chromosome 5.
CP116448.1:70285196-70285215
TCTTCTTGGAATGGAATTGTTTGCAATGGT70285196GGAAATGTTGCTGGGGTTGTTCTTGATAACTTAGGTCTGTCTGCTGATGT
Quercus variabilis isolate HB chromosome 5b.
CP129437.1:64665294-64665313
TCTTCTTGGAATGGAATTGTTTGCAATGGT64665294GGAAATGTTGCTGGGGTTGTTCTTGATAACTTAGGTCTGTCTGCCGATGT
Quercus variabilis isolate HB chromosome 5a.
CP129449.1:66632736-66632755
TCTTCTTGGAATGGAATTGTTTGCAATGGT66632736GGAAATGTTGCTGGGGTTGTTCTTGATAACTTAGGTCTGTCTGCCGATGT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:7096634-7096653
TCTTCTTGGAACGGTGTTGTGTGTAATGGC7096634GGAAATGTTGCTGGGGTTGTCCTTGATAATTTGAGTCTCTCTGCGGATGT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:7362842-7362861
TCTTCTTGGAACGGTGTTGTGTGTAATGGC7362842GGAAATGTTGCTGGGGTTGTCCTTGATAATTTGAGTCTTTCTGCGGATGT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6782668-6782687
TCTTCTTGGAACGGTGTTGTCTGTAATGGC6782668GGAAATGTTGCTGGGGTTGTCCTTGATAACTTGAGTCTCTCTGCGGATGT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:7260522-7260541
TCTTCTTGGAACGGTGTTGTGTGTAATGGC7260522GGAAATGTTGCTGGGGTTGTCCTTGATAATTTGAGTCTCTCTGCGGATGT
Quercus robur genome assembly, chromosome: 5.
OW028769.1:64866451-64866470
TCTTCTTGGAATGGAATTGTTTGCAATGGT64866451GGAAATGTTGCTGGGGTTGTTCTTGATAACTTAGGTCTGTCTGCTGATGT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:7089717-7089736
TCTTCTTGGAACGGTGTTGTGTGTAATGGC7089717GGAAATGTTGCTGGGGTTGTCCTTGATAATTTGAGTCTCTCTGCGGATGT
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:7469727-7469746
TCTTCTTGGAACGGTGTTGTGTGTAATGGC7469727GGAAATGTTGCTGGGGTTGTCCTTGATAATTTGAGTCTCTCTGCGGATGT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5762118-5762137
TCTTCTTGGAACGGTGTCGTGTGTAATGGC5762118GGAAATGTTGCTGGGGTTGTTCTTGATAATTTGAGTCTCTCTGCGGATGT
Quercus cerris genome assembly, chromosome: 3.
OY770008.1:64518121-64518140
TCTTCTTGGAATGGAATTGTTTGCAATGGT64518121GGAAATGTTGCTGGGGTTGTTCTTGATAACTTAGGTCTGTCTGCCGATGT
Myrica gale genome assembly, chromosome: 6.
OZ005603.1:14963661-14963680
TCTTCTTGGAATGGAATTGTTTGTAATGGG14963661GGAAATGTTGCTGGGGTTGTTCTTGATAACTTGGGCCTCTCCGCCGATGC
Chironomus tentans genome assembly, chromosome: 3.
OY754304.1:345357-345376
TTATGAACTTTGGTTCTTTTGAAAATCCAA345357GGAAATGTTGCTGGGGTTGTCGATTCTCTCTCGCTTTTCTCACTCTCTTA
Micromys minutus genome assembly, chromosome: 10.
OZ004790.1:64296342-64296361
TTTTTTAATGAGACTGACGTGTAAATGACA64296342ACAACCCCAGCAACATTTCCCCAGGACGCTTAAACACGCAACAGCTGTAT
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39447449-39447468
ACATCCGCAGAGAGACTCAAGTTATCAAGG39447449ACAACCCCAGCAACATTTCCGCCATTACACACAACACCGTTCCAAGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36188449-36188468
ACATCCGCAGAGAGACTCAAATTATCAAGG36188449ACAACCCCAGCAACATTTCCGCCATTACACACAACACCGTTCCAAGAAGA
Fagus sylvatica genome assembly, chromosome: 7.
OU015767.1:25110486-25110505
ACATCAGCAGAGAGACCCAAGTTATCAAGA25110486ACAACCCCAGCAACATTTCCACCATTACAAACAATTCCATTCCAAGAAGC
Fagus sylvatica genome assembly, chromosome: 7.
OU015767.1:25126309-25126328
ACATCAGCAGAGAGACCCAAGTTATCAAGA25126309ACAACCCCAGCAACATTTCCACCATTACAAACAATTCCATTCCAAGAAGC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:39752850-39752869
ACATCCGCAGAGAGACTCAAGTTATCAAGG39752850ACAACCCCAGCAACATTTCCGCCATTACACACAACACCGTTCCAAGAAGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39079176-39079195
ACATCCGCAGAGAGACTCAAGTTATCAAGG39079176ACAACCCCAGCAACATTTCCGCCATTACACACAACACCGTTCCAAGAAGA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:38634981-38635000
ACATCCGCAGAGAGACTCAAGTTATCAAGG38634981ACAACCCCAGCAACATTTCCGCCATTACACACAACACCGTTCCAAGAAGA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:39092720-39092739
ACATCCGCAGAAAGACTCAAATTATCAAGG39092720ACAACCCCAGCAACATTTCCGCCATTACACACAACACCGTTCCAAGAAGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:39901853-39901872
ACATCCGCAGAGAGACTCAAGTTATCAAGG39901853ACAACCCCAGCAACATTTCCGCCATTACACACAACACCGTTCCAAGAAGA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:34716953-34716972
ACATCTGCGGAGAGACTCAAACTATCAAGG34716953ACAACCCCAGCAACATTTCCGCCATTACACACGATTCCATTCCAAGAAGA
Myrica gale genome assembly, chromosome: 8.
OZ005605.1:13559536-13559555
GCATCAGCGGAGAGACCCAAGTTATCAAGA13559536ACAACCCCAGCAACATTTCCCCCATTACAAACAATTCCATTCCAAGAAGA
Myrica gale genome assembly, chromosome: 16.
OZ005613.1:12807242-12807261
GCATCAGCTGAGAGACCCAAGTTATCAAGA12807242ACAACCCCAGCAACATTTCCCCCATTACAAACAATTCCATTCCAAGAAGA
Diarsia mendica genome assembly, chromosome: 9.
OX438895.1:24831612-24831631
ACCACAGTTCCCAGATTTCAACGGCCCAGC24831612ACAACCCCAGCAACATTTCCAGCAATCAGGAGCACAGAACCAGTACGCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAAATGTTGCTGGGGTTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAAATGTTGCTGGGGTTGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.154 | 0.145 | search_plus_done; http://172.18.8.135:50400/match?q=GGAAATGTTGCTGGGGTTGT&k=0&no_gap=0&offset=0&limit=50
0.186 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=ACAACCCCAGCAACATTTCC&k=0&no_gap=0&offset=0&limit=34
0.195 | 0.009 | cgi_end;

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