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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:48:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

58ACPE48_UP_018_A09_21SEP2004_079 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE418438.1:3-22
AT3GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
BR009604 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-014H09 5', mRNA sequence.
EX024960.1:225-244
GGGCGGAGTGAAACCCGCTGCTTCCGGTAT225GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
BR020411 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-176E11 5', mRNA sequence.
EX035767.1:84-103
GGGCGGAGTGAAACCCGCTGCTTCCGGTAT84GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
RS1CV68TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX890662.1:164-183
GGGTGGGGTGAAACCCGCTGCTTCCGGAAT164GGAACACTACGACAGTGCATTAGCGTACCCAGTTCAGTCCCCTGGTGTCT
RR2FM43TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD543536.1:439-458
GGGTGGAGTGAAACCCGCTGCCTCCGGGAT439GGAACACTACGACAGTGCATTAGCACCCAGTTCAGTCCCCTGGTGTCTTA
RS1GK12TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD939971.1:93-112
GGGTGGAGTGAAACCCGCTGCTTCCGGAAT93GGAACACTACGACAGTGCATTAGCGTACCCAGTTCAGTCCCCTGGTGTCT
Raphanus sativus mRNA, clone: RSCS01I05, 5' end sequence.
FY446380.1:100-119
GGGTGGGGTGAAACCCGCTGCTTCCGGAAT100GGAACACTACGACAGTGCATTAGCGTACCCAGTTCAGTCCCCTGGTGTCT
Raphanus sativus mRNA, clone: RSCS20F15, 5' end sequence.
FY453004.1:288-307
GGGTGGGGTGAAACCCGCTGCTTCCGGAAT288GGAACACTACGACAGTGCATTAGCGTACCCAGTTCAGTCCCCTGGTGTCT
CCPd_EST_345 Piriformospora indica colonized with Chinese cabbage roots library Brassica rapa subsp. chinensis cDNA, mRNA sequence.
JZ469520.1:327-346
GGGCGGAGTGAAACCCGCTGCTTCCGGTAT327GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
CCPd_EST_972 Piriformospora indica colonized with Chinese cabbage roots library Brassica rapa subsp. chinensis cDNA, mRNA sequence.
JZ470064.1:297-316
GGGCGGAGTGAAACCCGCTGCTTCCGGTAT297GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_11960.
FX657535.1:1097-1116
GGGTGGAGTGAAACCCGCTGCCTCCGGAAT1097GGAACACTACGACAGTGCATTAGCTTACCCAGTTCAGTCCCCTGGTGTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_732.
FX693794.1:1050-1069
GGGCGGAGTGAAACCCGCTGCTTCCGGTAT1050GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2196.
FX726845.1:1028-1047
GGGCGGAGTGAAACCCGCTGCTTCCGGTAT1028GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_128.
FX727747.1:1094-1113
GGGTGGAGTGAAACCCGCTGCCTCCGGAAT1094GGAACACTACGACAGTGCATTAGCTTACCCAGTTCAGTCCCCTGGTGTCT
TSA: Raphanus sativus RS09256 mRNA sequence.
JT793803.1:2213-2232
GGGTGGGGTGAAACCCGCTGCTTCCGGAAT2213GGAACACTACGACAGTGCATTAGCGTACCCAGTTCAGTCCCCTGGTGTCT
TSA: Raphanus sativus RS09257 mRNA sequence.
JT793804.1:1069-1088
GGGTGGGGTGAAACCCGCTGCTTCCGGAAT1069GGAACACTACGACAGTGCATTAGCGTACCCAGTTCAGTCCCCTGGTGTCT
obv12d02.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH947182.1:150-169
GGGCGGAGTGAAACCCGCAGCTTCCGGTAT150GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence.
AC189457.2:59570-59589
GGGCGGAGTGAAACCCGCTGCTTCCGGTAT59570GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:11128276-11128295
GGGCGGAGTGAAACCCGCAGCTTCCGGTAT11128276GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:13174933-13174952
GGGTGGAGTGAAACCCGCTGCCTCCGGAAT13174933GGAACACTACGACAGTGCATTAGCTTACCCAGTTCAGTCCCCTGGTGTCT
B.oleracea putative imbibition protein mRNA.
X79330.1:1134-1153
GGGCGGAGTGAAACCCCGAGCTTCCGGTAT1134GGAACACTACGACAGTGCATTAGCATACCCAGTCCAGTCCCCAGGTGTCT
Eupithecia vulgata genome assembly, chromosome: 5.
OX297864.1:13265934-13265953
GGTGCGGCGTAGCCAAGGCTACGAAGGTAC13265934GGAACACTACGACAGTGCATTTATAATATAAATAAATAATATAAATAATA
BOGXA05TF BOGX Brassica oleracea genomic clone BOGXA05, genomic survey sequence.
BH509598.1:402-421
AGACACCTGGGGACTGGACTGGGTATGCTA402ATGCACTGTCGTAGTGTTCCATACCGGAAGCTGCGGGTTTCACTCCGCCC
BOT01-19O3TF BOT01 Brassica oleracea genomic clone BOT01-19O3, genomic survey sequence.
FI687121.1:256-275
AAACACCTGGGGACTGGACTGGGTATGCTA256ATGCACTGTCGTAGTGTTCCATACCGGAAGCTGCGGGTTTCACTCCGCCC
Brassica napus genome assembly, chromosome: C08.
HG994372.1:30593683-30593702
AGACACCTGGGGACTGGACTGGGTATGCTA30593683ATGCACTGTCGTAGTGTTCCATACCGGAAGCTGCGGGTTTCACTCCGCCC
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:39880416-39880435
AGACACCTGGGGACTGGACTGGGTATGCTA39880416ATGCACTGTCGTAGTGTTCCATACCGGAAGCTGCGGGTTTCACTCCGCCC
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:30858017-30858036
AGACACCAGGGGACTGAACTGGGTAAGCTA30858017ATGCACTGTCGTAGTGTTCCATTCCGGAGGCAGCGGGTTTCACTCCACCC
Cardamine flexuosa genome assembly, chromosome: 5.
OY743218.1:21891196-21891215
AGACACCTGGAGATTGAACTGGGTATGCTA21891196ATGCACTGTCGTAGTGTTCCATTCCTGATGCAGCAGGTTTAACTCCACCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAACACTACGACAGTGCAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAACACTACGACAGTGCAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.890 | 0.882 | search_plus_done; http://172.18.8.135:50400/match?q=GGAACACTACGACAGTGCAT&k=0&no_gap=0&offset=0&limit=50
0.978 | 0.087 | search_minus_done; http://172.18.8.135:50400/match?q=ATGCACTGTCGTAGTGTTCC&k=0&no_gap=0&offset=0&limit=28
0.982 | 0.004 | cgi_end;

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