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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-30 12:43:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Bos gaurus x Bos taurus genome assembly, chromosome: 24.
OX258978.1:463817-463836
ACTCTCAAGATAGCGAAGGTGCATATCAAA463817GGAACAGTGTCAGAGAGCCCAAACTGTTGCATCTTCTCATACACAGAAAA
Bos taurus strain mammals genome assembly, chromosome: 24.
OX344713.1:2020474-2020493
ACTCTCAAGATAGCGAAGGTGCATATCAAA2020474GGAACAGTGTCAGAGAGCCCAAACTGTTGCATCTTCTCATACACAGAAAA
Bos taurus genome assembly, chromosome: Bta24.
OY997252.1:1078751-1078770
ACTCTCAAGATAGCGAAGGTGCATATCAAA1078751GGAACAGTGTCAGAGAGCCCAAACTGTTGCATCTTCTCATACACAGAAAA
PVEPSE2005F07.g Common bean seedling EST Library - PVEPSE2 Phaseolus vulgaris cDNA clone PVEPSE2005F07 5', mRNA sequence.
CB539454.1:201-220
GGTGAAGCGGAAAACCCTTGAGGCCATGCT201GGAACAGTGTCAGAGAGCCCTTGAACTCGTCAATGCTTCCGATGGACAAC
PVEPSE2007F12.g Common bean seedling EST Library - PVEPSE2 Phaseolus vulgaris cDNA clone PVEPSE2007F12 5', mRNA sequence.
CB539600.1:214-233
GGTGAAGCGGAAAACCCTTGAGGCCATGCT214GGAACAGTGTCAGAGAGCCCTTGAACTCGTCAATGCTTCCGATGGACAAC
RTS_122_G09 Phaseolus vulgaris P- root EST library Phaseolus vulgaris cDNA 5', mRNA sequence.
CV542617.1:102-121
GGTGAAGCGGAAAACCCTTGAGGCCATGCT102GGAACAGTGTCAGAGAGCCCTTGAACTCGTCAATGCTTCCGATGGACAAC
Pv034A_M13F_D02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE703223.1:99-118
GGTGAAGCGGAAAACCCTTGAGGCCATGCT99GGAACAGTGTCAGAGAGCCCTTGAACTCGTCAATGCTTCCGATGGACAAC
Pv034A_M13R_D02.ab1 Phaseolus vulgaris cv Early gallatin Phaseolus vulgaris cDNA, mRNA sequence.
FE703224.1:49-68
GGTGAAGCGGAAAACCCTTGAGGCCATGCT49GGAACAGTGTCAGAGAGCCCTTGAACTCGTCAATGCTTCCGATGGACAAC
MOOAF95TF MOO Vigna unguiculata cDNA 5', mRNA sequence.
FF384149.1:288-307
GGTGAAGCGGAAAACCCTTGAGGCCATGCT288GGAACAGTGTCAGAGAGCCCCTTGAACTCATCAATGCTTCCCGATGGGAC
UCRVU08_CCNS15246_b1 Cowpea IT97K-461-4 Mixed Tissue and Conditions cDNA Library UCRVU08-1-2 Vigna unguiculata cDNA clone CCNS15246.b1, mRNA sequence.
FG898131.1:247-266
GGTGAAGCGGAAAACCCTTGAGGCCATGCT247GGAACAGTGTCAGAGAGCCCTTGAACTCATCAATGCTTCCGATGGACAAC
Glycyrrhiza uralensis cDNA, clone: S02198-Re11-F10, 5'-end sequence.
FS265606.1:117-136
GGTGAAGAGGAAGACCCTTCAGGCCGTGCT117GGAACAGTGTCAGAGAGCCCTCGAACTCATCAACGCTTCCGATGAAGAAG
Glycyrrhiza uralensis cDNA, clone: kanzou018AB05.f1, 5'-end sequence.
FS273009.1:128-147
GGTGAAGAGGAAGACCCTTCAGGCCGTGCT128GGAACAGTGTCAGAGAGCCCTCGAACTCATCAACGCTTCCGATGAAGAAG
Glycyrrhiza uralensis mRNA, clone: EPP006KIAA21S004009, 5'-end sequence.
FS992005.1:120-139
GGTGAAGAGGAAGACCCTTCAGGCCGTGCT120GGAACAGTGTCAGAGAGCCCTCGAACTCATCAACGCTTCCGATGAAGAAG
FCCCVU3001D01.b0 Developing seeds (10 days after anthesis) Library Vigna unguiculata cDNA clone FCCCVU3001D01 similar to unknown protein [Arabidopsis thaliana], mRNA sequence.
GH619298.1:186-205
GGTGAAGCGGAAAACCCTTGAGGCCATGCT186GGAACAGTGTCAGAGAGCCCTTGAACTCATCAATGCTCCCGATGGACAAC
PVUSE1NG-RP-012_F09_31MAR2009_043 PVUSE1NG Phaseolus vulgaris cDNA, mRNA sequence.
GW885791.1:110-129
GGTGAAGCGGAAAACCCTTGAGGCCATGCT110GGAACAGTGTCAGAGAGCCCTTGAACTCGTCAATGCTTCCGATGGACAAC
vsu-ars_004157_LI10Contig_4538 VSU-ARS-L10 Phaseolus acutifolius cDNA, mRNA sequence.
HO779124.1:151-170
GGTGAAGCGGAAAACCCTTGAGGCCATGCT151GGAACAGTGTCAGAGAGCCCTTGAACTCGTCAATGCTTCTGATGGACAAC
Vigna angularis mRNA, clone: VES07K23.
HX944983.1:252-271
GGTGAAGCGGAAAACCCTTGAGGCCATGCT252GGAACAGTGTCAGAGAGCCCTTGAACTCATCAATGCTTCCGATGGACAAC
Bos taurus clone CH240-199M21, WORKING DRAFT SEQUENCE, 32 unordered pieces.
AC170147.3:137684-137703
ACTCTCAAGATAGCGAAGGTGCATATCAAA137684GGAACAGTGTCAGAGAGCCCAAACTGTTGCATCTTCTCATACACAGAAAA
Sphenostylis stenocarpa genome assembly, chromosome: 8.
OY731405.1:10262019-10262038
GGTGAAGCGGAAAACCCTTGAGGCCATGCT10262019GGAACAGTGTCAGAGAGCCCTTGAACTCATCAATGCTTCCGATGCACAAA
Ovis canadensis canadensis isolate 43U chromosome 23 sequence.
CP011908.1:184083-184102
TTTTCTGTGTATGGGAAGATGCAACAGTTC184083GGGCTCTCTGACACTGTTCCTTTGATATGCACCTTAGCTATCTTGAGAGT
Bos taurus genome assembly, chromosome: X.
LR962768.1:97023213-97023232
TTTTCTGTGTATGAGAAGATGCAACAGTTT97023213GGGCTCTCTGACACTGTTCCTTTGATATGCACCTTCGCTATCTTGAGAGT
Bos gaurus x Bos taurus genome assembly, chromosome: 1.
OX258955.1:684416-684435
TTTTCTGTGTATGGGAAGATGCAACAGTTT684416GGGCTCTCTGACACTGTTCCTTTGATATGCACCTTAGCTACCTTGAGAGT
Bos taurus strain mammals genome assembly, chromosome: 1.
OX344690.1:1923579-1923598
TTTTCTGTGTATGGGAAGATGCAACAGTTT1923579GGGCTCTCTGACACTGTTCCTTTGATATGCACCTTAGCTACCTTGAGAGT
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M019C14, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.
AC273206.1:36813-36832
GTTGTCCATCGGAAGCATTGATGAGTTCAA36813GGGCTCTCTGACACTGTTCCAGCATGGCCTCAAGGGTTTTCCGCTTCACC
Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
AP015036.1:27992861-27992880
GTTGTCCATCGGAAGCATTGATGAGTTCAA27992861GGGCTCTCTGACACTGTTCCAGCATGGCCTCAAGGGTTTTCCGCTTCACC
Cicer arietinum chromosome Ca2.
CP039332.1:22552255-22552274
CGTCTTGATCAGAAGCGTTGATGAGTTCAA22552255GGGCTCTCTGACACTGTTCCAAAACGGTCTGAAGGGTTTTTCTCTTGACC
Vigna unguiculata cultivar Xiabao 2 chromosome Vu08.
CP039351.1:34036588-34036607
GTTGTCCATCGGAAGCATTGATGAGTTCAA34036588GGGCTCTCTGACACTGTTCCAGCATGGCCTCAAGGGTTTTCCGCTTCACC
Cicer arietinum chromosome Ca2.
CP040767.1:22552251-22552270
CGTCTTGATCAGAAGCGTTGATGAGTTCAA22552251GGGCTCTCTGACACTGTTCCAAAACGGTCTGAAGGGTTTTTCTCTTGACC

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