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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 16:10:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST263233 tomato susceptible, Cornell Solanum lycopersicum cDNA clone cLES18L8, mRNA sequence.
AI782354.1:436-458
TNAAGACTACACAAAGACAGAGGAGGAAGT436GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGT
EST474689 tomato shoot/meristem Solanum lycopersicum cDNA clone cTOF23K17 5' sequence, mRNA sequence.
BG129043.1:327-349
TAAAGACTACACAAAGACAGAGGAGGAAGT327GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACT
Solanum lycopersicum cDNA, clone: LC12CG01, 5' end, expressed in leaf.
BP908593.1:141-163
TAAAGATTACACAAAGACAGAGGAGGAAGT141GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACT
TSA: Costus pictus Locus_6273_Transcript_1/2.Copileaf mRNA sequence.
JW263702.1:649-671
TCCATTCTTCATATTTTGCACAGAATTGTT649GGAAGATAGATCAAAACGAGCTGTTTGGTCTGCACTAGCAAATACTGAAACTA
TSA: Costus pictus Locus_6273_Transcript_2/2.Copileaf mRNA sequence.
JW263703.1:332-354
TCCATTCTTCATATTTTGCACAGAATTGTT332GGAAGATAGATCAAAACGAGCTGTTTGGTCTGCACTAGCAAATACTGAAACTA
Solanum lycopersicum cDNA, clone: LEFL1054DC02, HTC in leaf.
AK323345.1:1023-1045
TAAAGACTACACAAAGACAGAGGAGGAAGT1023GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACT
Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07SLm0075L20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.
AC212652.1:18684-18706
ATTTGATTTGGTTTCTACAGAGGAGGAAGT18684GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACT
Solanum lycopersicum Micro-Tom DNA, chromosome 7, draft genome sequence.
AP028941.1:65833036-65833058
ATTTGATTTGGTTTCTACAGAGGAGGAAGT65833036GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACT
Solanum lycopersicum cultivar I-3 chromosome 7.
CP023763.1:63355410-63355432
ATTTGATTCGGTTTCTGCAGAGGAGGAAGT63355410GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGAAAATGGAGAGAGTACT
Solanum tuberosum cultivar P8 chromosome 7.
CP046689.1:50361690-50361712
ATTTGATTCGGTTTCTRCAGAGGAGGAAGT50361690GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGAAGATGGAGAGAGTACT
Solanum tuberosum cultivar MSH/14-112 chromosome 7.
CP046700.1:50362542-50362564
ATTTGATTYGGTTTCTRCAGAGGAGGAAGT50362542GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGAAGATGGAGAGAGTACT
Solanum pinnatisectum cultivar CGN17745 chromosome 7.
CP047562.1:50348686-50348708
ATTTGATTCGGTTTCTGCAGAGGAGGAAGT50348686GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGAAGATGGAGAGAGTACT
Solanum tuberosum cultivar Solyntus chromosome 7.
CP055240.1:32726659-32726681
ATTTGATTTGGTTTCTACAGAGGAGGAAGT32726659GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGAAGATGGAGAGAGTACT
Solanum verrucosum cultivar 11H23 chromosome 7.
CP133618.1:44482656-44482678
ATTTGATTTGGTTTCTACAGAGGAGGAAGT44482656GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGAAGATGGAGAGAGTACT
Solanum lycopersicum chromosome ch07, complete genome.
HG975519.1:60678975-60678997
ATTTGATTTGGTTTCTACAGAGGAGGAAGT60678975GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACT
Solanum lycopersicum genome assembly, chromosome: 7.
OU640350.1:64305368-64305390
ATTTGATTTGGTTTCTACAGAGGAGGAAGT64305368GGAAGATAGATCAAAACGAGCTGCAGCAGCTGCTCGCAAATGGAGAGAGTACT
Solanum pennellii chromosome ch07, complete genome.
HG975446.1:72699466-72699488
AGTACTCTCTCCATTTTCGAGCAGCTGCTG72699466CAGCTCGTTTTGATCTATCTTCCACTTCCTCCTCTGCAGAAACCGAATCAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAAGATAGATCAAAACGAGCTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAAGATAGATCAAAACGAGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.164 | 0.155 | search_plus_done; http://172.18.8.135:50400/match?q=GGAAGATAGATCAAAACGAGCTG&k=0&no_gap=0&offset=0&limit=50
0.194 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCTCGTTTTGATCTATCTTCC&k=0&no_gap=0&offset=0&limit=34
0.195 | 0.001 | cgi_end;

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