GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 16:20:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 53669 from patent US 9029636.
HK962732.1:3-22
AT3GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCCAACGAGG
Lotus japonicus cDNA, clone:MFBL008h12_f, 3' end.
BP041698.1:201-220
CTCCGTTCACGATTCGCCGGGTTCAACAAT201GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCAAACGAAG
Glycine max cDNA clone: GMFL01-42-E18, 5'end.
BW677614.1:192-211
GCTTTTGTGATTGCGTTCATTCTCACCAAT192GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCCAACGAGG
Lotus japonicus cDNA, clone: LjFL3-001-CB12, 5'-end sequence.
FS318419.1:175-194
CTCCGTTCACGATTCGCCGGGTTCAACAAT175GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCAAACGAAG
Lotus japonicus cDNA, clone: LjFL3-015-BF11, 5'-end sequence.
FS323189.1:146-165
CTCCGTTCACGATTCGCCGGACTCAACAAT146GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCAAACGAAG
Lotus japonicus cDNA, clone: LjFL3-062-CF06, 5'-end sequence.
FS338632.1:141-160
CTCCGTTCACGATTCGCCGGGTTCAACAAT141GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCAAACGAAG
GD_TBa165N15.F GD_TBa Glycine dolichocarpa genomic 5', genomic survey sequence.
HN463648.1:743-762
GCTTTTGTGATTGCGCTCATTCTCACCAAT743GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCCAACGGTA
Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
AP015038.1:7806179-7806198
CTGATTGAGCTCATTCTCGCCCTCACCAAT7806179GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCCAACGGTA
Glycine max cultivar Williams 82 chromosome 9.
CP126434.1:1444101-1444120
GCTTTTGTGATTGCGTTCATTCTCACCAAT1444101GGACAAGTCAAGCGCTCTGGAGTACATCAACCAGATGTTCCCCAACGGTA
454GmaGlobSeed452484 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD709835.1:21-40
GAACATCTGGTTGATGTACT21CCAGAGCGCTTGACTTGTCCATTGGTGAGAATGAACGCAATCACAAAAGC
GS_Ba034H13.F GS_Ba Glycine syndetika genomic 5', genomic survey sequence.
HN757341.1:722-741
TACCGTTGGGGAACATCTGGTTGATGTACT722CCAGAGCGCTTGACTTGTCCCTTGGTGAGAATGATCGCAATCACAAAAGC
Lotus japonicus genomic DNA, chromosome 6, clone: LjB01J04, BM1377.
AP010318.1:1546-1565
TACCGTTTGGGAACATCTGGTTGATGTACT1546CCAGAGCGCTTGACTTGTCCATTGTTGAACCCGGCGAATCGTGAACGGAG
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:59493516-59493535
TACCGTTTGGGAACATCTGGTTGATGTACT59493516CCAGAGCGCTTGACTTGTCCATTGTTGAGTCCGGCGAATCGTGAACGGAG
Trilocha varians NBRP DNA, chromosome A3, sequence.
AP028278.1:1245309-1245328
CATCCGGCTATGGAATGAGCTCCCCTCTTC1245309CCAGAGCGCTTGACTTGTCCTTCTTCAAACGAGGCTTGAGGAGGGTCCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGACAAGTCAAGCGCTCTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACAAGTCAAGCGCTCTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.379 | 0.370 | search_plus_done; http://172.18.8.135:50400/match?q=GGACAAGTCAAGCGCTCTGG&k=0&no_gap=0&offset=0&limit=50
0.537 | 0.158 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGAGCGCTTGACTTGTCC&k=0&no_gap=0&offset=0&limit=41
0.540 | 0.003 | cgi_end;

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