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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 13:33:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BNDH5DCT_UP_002_A04_15DEC2003_032 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
CN727011.1:661-682
TGCCTCAAGGTACCCGAAAACCGAAGCTTG661GGACATAATGCTGGGGATGAATCTATGGGGGACAATATACAACATGGTCTAC
Brassica oleracea var. viridis mRNA, clone: KALE-040A18, 5' end sequence.
DK470857.1:664-685
TGCCTCAAGGTACCCGAAAACCGAAGCTTG664GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
Brassica oleracea var. viridis mRNA, clone: KALE-094N10, 5' end sequence.
DK491819.1:673-694
TGCCTCAAGGTACCCGAAAACCGAAGCTTG673GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
Brassica oleracea var. viridis mRNA, clone: KALE-097O19, 5' end sequence.
DK493004.1:642-663
TGCCTCAAGGTACCCGAAAACCGAAGCTTG642GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
Brassica oleracea var. viridis mRNA, clone: KALE-040A18, 3' end sequence.
DK530474.1:186-207
TGCCTCAAGGTACCCGAAAACCGAAGCTTG186GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
Brassica oleracea var. viridis mRNA, clone: KALE-097O19, 3' end sequence.
DK552584.1:290-311
TGCCTCAAGGTACCCGAAAACCGAAGCTTG290GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
40JKME7D_UP_055_B03_17JUN2006_029 40JKME7D Brassica napus cDNA 5', mRNA sequence.
ES981961.1:471-492
TGCCTCAAGGTACCCGAAAACCGAAGCTTG471GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
0211740 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV145806.1:430-451
TGCCTCAAGGTACCCGAAAACCGAAGCTTG430GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
RR3CX81TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX765987.1:322-343
TGCCTCGAGGTACCCGAAAACGGAAGCTTG322GGACATAATGCTGGGGATGAATCTATGGGGCACGATATACAACATGGTCTAC
RS1BX06TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX887718.1:635-656
TGCATCAAGGTACCCGAAGACCGAAGCTTG635GGACATAATGCTGGGGATGAATCTATGGGGCACGATATACAACATGGTCTAC
RR1DU46TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY899394.1:675-696
TTACCGCTAAGTACCCCAAAACCAACGCGG675GGACATAATGCTGGGGATGAATCTATGGGGAACCATATACAACATGGTCTAC
RR2FL72TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD543480.1:664-685
ATTGCCTCAAGTACCCGAAAACGGAGCTTG664GGACATAATGCTGGGGATGAATCTATGGGGCACGATATACACATGGTCTACA
RS2F586TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD569704.1:652-673
TGCCTCGAGGTACCCAAAAACCGAAGCTTG652GGACATAATGCTGGGGATGAATCTATGGGGCACGATATACAACATGGTCTAC
KBrH043M10R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH043M10, genomic survey sequence.
DX908165.1:660-681
GCCTCAAGGTACCCGAAAACAGAAAGCTTG660GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACTTGGTCTAC
Brassica rapa subsp. pekinensis clone KBrH090N16, complete sequence.
FP102022.1:113445-113466
TGCCTCAAGGTACCCGAAAACAGAAGCTTG113445GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACTTGGTCTAC
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:32245608-32245629
TGCCTCAAGGTACCCGAAAACCGAAGCTTG32245608GGACATAATGCTGGGGATGAATCTATGGGGGACAATATACAACATGGTCTAC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:26698870-26698891
TGCCTCAAGGTACCCGAAAACCGAAGCTTG26698870GGACATAATGCTGGGGATGAATCTATGGGGGACAATATACAACATGGTCTAC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:50922274-50922295
TGCCTCAAGGTACCCGAAAACCGAAGCTTG50922274GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
Brassica rapa genome, scaffold: A02.
LR031573.1:25062211-25062232
TGCCTCAAGGTACCCGAAAACCGAAGCTTG25062211GGACATAATGCTGGGGATGAATCTATGGGGGACAATATACAACATGGTCTAC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:52026686-52026707
TGCCTCAAGGTACCCGAAAACCGAAGCTTG52026686GGACATAATGCTGGGGATGAATCTATGGGGCACAATATACAACATGGTCTAC
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:25976162-25976183
TGCCTCAAGGTACCCGAAAACCGAAGCTTG25976162GGACATAATGCTGGGGATGAATCTATGGGGGACAATATACAACATGGTCTAC
0211578 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV145644.1:525-546
GTAGACCATGTTGTATATTGTGCCCCATAG525ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTCGGGTACCTTGAGGCA
RS2AI10JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW727855.1:450-471
GTAAACCATGTTGTATATCGCGCCCCATAA450ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTCTTCGGGTACCTTGATGCA
RR3CX81JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX769690.1:343-364
GTAGACCATGTTGTATATCGTGCCCCATAG343ATTCATCCCCAGCATTATGTCCCAAGCTTCCGTTTTCGGGTACCTCGAGGCA
RR1DU46JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY895176.1:511-532
GTAGACCATGTTGTATATGGTTCCCCATAA511ATTCATCCCCAGCATTATGTCCCCGCGTTGGTTTTGGGGTACTTAGCGGTAA
RS3CZ13JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY942186.1:520-541
GTAGACCATGTTGTATATCGTGCCCCATAG520ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA
RS2F586JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573858.1:519-540
GTAGACCATGTTGTATATCGTGCCCCATAG519ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA
RS1FW31JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD934418.1:571-592
GTAGACCATGTTGTATATCGTGCCCCATAG571ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_6326.
FX662810.1:398-419
GTAGACCATGTTGTATATCGTGCCCCATAG398ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_5813.
FX703808.1:575-596
GTAGACCAAGTTGTATATTGTGCCCCATAG575ATTCATCCCCAGCATTATGTCCCAAGCTTCTGTTTTCGGGTACCTTGAGGCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20280.
FX744597.1:468-489
GTAGACCATGTTGTATATCGTGCCCCATAG468ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA
TSA: Raphanus sativus RS26662 mRNA sequence.
JT811209.1:345-366
GTAGACCATGTTGTATATCGTGCCCCATAG345ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA
BONBD79TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONBD79, genomic survey sequence.
BZ453768.1:163-184
GTAGACCATGTTGTATATTGTGCCCCATAG163ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTCGGGTACCTTGAGGCA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:11613084-11613105
GTAGACCATGTTGTATATTGTGCCCCATAG11613084ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTCGGGTACCTTGAGGCA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:16304770-16304791
GTAGACCATGTTGTATATCGTGCCCCATAG16304770ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:16304770-16304791
GTAGACCATGTTGTATATCGTGCCCCATAG16304770ATTCATCCCCAGCATTATGTCCCAAGCTTCGGTTTTTGGGTACCTCGAGGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGACATAATGCTGGGGATGAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACATAATGCTGGGGATGAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.730 | 0.721 | search_plus_done; http://172.18.8.135:50400/match?q=GGACATAATGCTGGGGATGAAT&k=0&no_gap=0&offset=0&limit=50
1.284 | 0.554 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCATCCCCAGCATTATGTCC&k=0&no_gap=0&offset=0&limit=29
1.294 | 0.010 | cgi_end;

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