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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 07:00:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-001G06, 5' end sequence.
DK456097.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAACTATTTGGAATCTAATTT
RS1AM35TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW715502.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAATTATTTGGAATCTAACAA
RS1B755TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW717953.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAATTATTTGGAATCTAACAA
RS2AU71TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW725762.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAACTATTTGAAATCTAATTT
RS2D393TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX898215.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAACTATTTGAAATCTAATTT
RR1DL37TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY898585.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAACTATTTGAAATCTAATTT
RR1DP12TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY898927.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAACTATTTGAAATCTAATTT
RS2DZ36TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939804.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAATTATTTGGAATCTAACAA
RR1FT06TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD536335.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACGAACTATTTGAAATCTAATTT
RS1EW32TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD562161.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAACTATTTGAAATCTAATTT
RS1GO12TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD940325.1:1-22
1GGACATCTCTTCTCGCCTCTTTTCCTTTAACAAACTATTTGAAATCTAATCT
RR1FT06JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD531827.1:667-688
AAATTAGATTTCAAATAGTTCGTTAAAGGA667AAAGAGGCGAGAAGAGATGTCC
RR3GZ41JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD977101.1:656-677
TTGTTAGATTCCAAATAATTTGTTAAAGGA656AAAGAGGCGAGAAGAGATGTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGACATCTCTTCTCGCCTCTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGACATCTCTTCTCGCCTCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.899 | 0.890 | search_plus_done; http://172.18.8.135:50400/match?q=GGACATCTCTTCTCGCCTCTTT&k=0&no_gap=0&offset=0&limit=50
1.067 | 0.168 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGAGGCGAGAAGAGATGTCC&k=0&no_gap=0&offset=0&limit=39
1.069 | 0.002 | cgi_end;

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