GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:12:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Heterocephalus glaber genome assembly, chromosome: 13.
OX090953.1:59583486-59583505
ACAGGGTTAAGACCCTTACCCAGGGCTTCA59583486GGAGTACACAGTGGGGGAAATAAAGACAACTCAGCCTGGCAATGCAGGTG
Orcinus orca genome assembly, chromosome: 3.
OW443362.1:92781523-92781542
TGCCTAACCCTGTGAATGCTGCTTGGAGAT92781523GGAGTACACAGTGGGGGAAATGACCTGCAATTAGAAGACCAAAAGATAAA
Delphinus delphis genome assembly, chromosome: 3.
OX465328.1:80754760-80754779
TGCCTAACCCTGTGAATGCTGCTTGGAGAT80754760GGAGTACACAGTGGGGGAAATGACCTGCAATTAGAAGACCAAAAGATAAA
Cuc3_3_F02 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN910045.1:212-231
ATTCAATCGATAAAGCACCTCTTATGATAT212GGAGTACACAGTGGGGGAAAATTTTTAACCAAAAATAAATAAAAGAGATT
Cuc5_1_D09 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN910632.1:241-260
ATTCAATCGATAAAGCACCTCTTATGATAT241GGAGTACACAGTGGGGGAAAATTTTTAACCAAAAATAAATAAAAGAGATT
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_3038, mRNA sequence.
JW921207.1:260-279
ATTCAATCGATAAAGCACCTCTTATGATAT260GGAGTACACAGTGGGGGAAAATTTTTAACCAAAAATAAATAAAAGAGATT
Heterocephalus glaber genome assembly, chromosome: 13.
OX090921.1:38573629-38573648
CACCTGCATTGCCAGGCTGAGTTGTCTTTA38573629TTTCCCCCACTGTGTACTCCTGAAGCCCTGGGTAAGGGTCTTAACCCTGT
Heterocephalus glaber genome assembly, chromosome: 13.
OZ001078.1:23211629-23211648
CACCTGCATTGCCAGGCTGAGTTGTCTTTA23211629TTTCCCCCACTGTGTACTCCTGAAGCCCTGGGTAAGGGTCTTAACCCTGT
Heterocephalus glaber genome assembly, chromosome: 13.
OZ001121.1:22094625-22094644
CACCTGCATTGCCAGGCTGAGTTGTCTTTA22094625TTTCCCCCACTGTGTACTCCTGAAGCCCTGGGTAAGGGTCTTAACCCTGT
Lagenorhynchus albirostris genome assembly, chromosome: 3.
OX459074.1:92494874-92494893
TTTATCTTTTGGTCTTCTAATTGCAGGTCA92494874TTTCCCCCACTGTGTACTCCATCTCCAAGCAGCATTCACAGGGTTAGGCA
Balaenoptera acutorostrata genome assembly, chromosome: 2.
OX465351.1:96661797-96661816
TTTATCTTTTGGTCTTCTAATTGCAGGTCA96661797TTTCCCCCACTGTGTACTCCATCTCCAAGCAGCATTCACAGGCTTAGGCA
Stenella coeruleoalba genome assembly, chromosome: 3.
OX596387.1:92318255-92318274
TTTATCTTTTGGTCTTCTAATTGCAGGTCA92318255TTTCCCCCACTGTGTACTCCATCTCCAAGCAGCATTCACAGGGTTAGGCA
Globicephala melas genome assembly, chromosome: 3.
OY734041.1:92365680-92365699
TTTATCTTTTGGTCTTCTAATTGCAGGTCA92365680TTTCCCCCACTGTGTACTCCATCTCCAAGCAGCATTCACAGGGTTAGGCA
Phocoena phocoena genome assembly, chromosome: 3.
OZ004759.1:93314963-93314982
TTTATCTTTTGGTCTTCTAATTGCAGGTCA93314963TTTCCCCCACTGTGTACTCCATCTCCAAGCAGCATTCACAGGGTTAGGCA
RG5_D07 Cucumber leaf Cucumis sativus cDNA, mRNA sequence.
CK085591.1:216-235
AATCTCTTTTATTTATTTTTGGTTAAAAAT216TTTCCCCCACTGTGTACTCCATATCATAAGAGGTGCTTTATCGATTGAAT
csa01-1ms3-a12 Csa01 Cucumis sativus cDNA clone csa01-1ms3-a12 5', mRNA sequence.
CO995334.1:420-439
AATCTCTTTTATTTATTTTTGGTTAAACAT420TTTCCCCCACTGTGTACTCCATATCATAAGAGGTGCTTTATCGATTGAAT
csa01-3ms1-h03 Csa01 Cucumis sativus cDNA clone csa01-3ms1-h03 5', mRNA sequence.
CO998468.1:258-277
AATCTCTTTTATTTATTTTTGGTTAAAAAT258TTTCCCCCACTGTGTACTCCATATCATAAGAGGTGCTTTATCGATTGAAT
Cucumis sativus mRNA for arabinogalactan protein, complete cds.
AB029092.2:832-851
AATCTCTTTTATTTATTTTTGGTTAAAAAT832TTTCCCCCACTGTGTACTCCATATCATAAGAGGTGCTTTATCGATTGAAT
Cucumis sativus mRNA expressed in cucumber hypocotyls, complete cds.
AB029147.1:832-851
AATCTCTTTTATTTATTTTTGGTTAAAAAT832TTTCCCCCACTGTGTACTCCATATCATAAGAGGTGCTTTATCGATTGAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGAGTACACAGTGGGGGAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGAGTACACAGTGGGGGAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.227 | 0.218 | search_plus_done; http://172.18.8.135:50400/match?q=GGAGTACACAGTGGGGGAAA&k=0&no_gap=0&offset=0&limit=50
0.387 | 0.160 | search_minus_done; http://172.18.8.135:50400/match?q=TTTCCCCCACTGTGTACTCC&k=0&no_gap=0&offset=0&limit=44
0.396 | 0.009 | cgi_end;

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