GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 07:59:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 5486 from patent US 7557201.
GP474489.1:234-253
AGAGAGCTGAGAGCAAAGGCATCACAAAAG234GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 13994 from patent US 7557201.
GP482997.1:107-126
AGAGAGCTGAGAGCAAAGGCATCACAAAAG107GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 17301 from patent US 7557201.
GP486304.1:252-271
AGAGAGCTGAGAGCAAAGGCATCACAAAAG252GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 22536 from patent US 7557201.
GP491539.1:228-247
AGAGAGCTGAGAGCAAAGGCATCACAAAAG228GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
Sequence 23311 from patent US 7557201.
GP492314.1:238-257
AGAGAGCTGAGAGCAAAGGCATCACAAAAG238GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 3546 from patent US 9976157.
MI669540.1:390-409
AGAGAGCTGAGAGCAAAGGCATCACAAAAG390GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 3556 from patent US 9976157.
MI669550.1:300-319
AGAGAGCTGAGAGCAAAGGCATCACAAAAG300GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 3546 from patent US 10501750.
MO571024.1:390-409
AGAGAGCTGAGAGCAAAGGCATCACAAAAG390GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 3556 from patent US 10501750.
MO571034.1:300-319
AGAGAGCTGAGAGCAAAGGCATCACAAAAG300GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 1613 from patent US 10858403.
MX113083.1:259-278
AGAGAGCTGAGAGCAAAGGCATCACAAAAG259GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
Sequence 3546 from patent US 11293032.
OO007737.1:390-409
AGAGAGCTGAGAGCAAAGGCATCACAAAAG390GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 3556 from patent US 11293032.
OO007747.1:300-319
AGAGAGCTGAGAGCAAAGGCATCACAAAAG300GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Sequence 1613 from patent US 11421004.
OO462446.1:259-278
AGAGAGCTGAGAGCAAAGGCATCACAAAAG259GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
Sequence 1613 from patent US 11472853.
OO764566.1:259-278
AGAGAGCTGAGAGCAAAGGCATCACAAAAG259GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
Sequence 1613 from patent US 11485761.
OO823724.1:259-278
AGAGAGCTGAGAGCAAAGGCATCACAAAAG259GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
BNLGHi5506 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW187456.1:44-63
AGAGAGCTGAGAGCAAAGGCATCACAAAAG44GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
GA__Ea0034H19f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0034H19f, mRNA sequence.
BE054152.2:223-242
AGAGAGCTGAGAGCAAAGGCATCACAAAAG223GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0018B09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0018B09f, mRNA sequence.
BF273459.1:227-246
AGAGAGCTGAGAGCAAAGGCATCACAAAAG227GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0022A12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0022A12f, mRNA sequence.
BF274781.2:50-69
TTAGAGCTGAGAGCAAAGGCATCACAAAAG50GGATCATTTGGTGGTTCTGGGCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0022O12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0022O12f, mRNA sequence.
BF275027.1:219-238
AGAGAGCTGAGAGCAAAGGCATCACAAAAG219GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0026I16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0026I16f, mRNA sequence.
BF277099.2:234-253
AGAGAGCTGAGAGCAAAGGCATCACAAAAG234GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0032A12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032A12f, mRNA sequence.
BF278183.2:224-243
AGAGAGCTGAGAGCAAAGGCATCACAAAAG224GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0036K20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0036K20f, mRNA sequence.
BF279017.1:181-200
AGAGAGCTGAGAGCAAAGGCATCACAAAAG181GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Ea0011E13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0011E13f, mRNA sequence.
BG440996.1:242-261
AGAGAGCTGAGAGCAAAGGCATCACAAAAG242GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Ea0021D22f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0021D22f, mRNA sequence.
BG443589.1:243-262
AGAGAGCTGAGAGCAAAGGCATCACAAAAG243GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Ea0023O09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0023O09f, mRNA sequence.
BG444292.1:200-219
AGAGAGCTGAGAGCAAAGGCATCACAAAAG200GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0039K20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0039K20f, mRNA sequence.
BG446883.1:224-243
AGAGAGCTGAGAGCAAAGGCATCACAAAAG224GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0040B12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040B12f, mRNA sequence.
BG447000.1:237-256
ATAGAGCTGATAGCAAAGGCATCACAAAAG237GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0040D12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040D12f, mRNA sequence.
BG447018.1:237-256
AGAGAGCTGAGAGCAAAGGCATCACAAAAG237GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0040J16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040J16f, mRNA sequence.
BG447106.1:172-191
AGAGAGCTGAGAGCAAAGGCATCACANAAG172GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0040J18f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040J18f, mRNA sequence.
BG447107.1:123-142
AGAGAGCTGAGAGCAAAGGCATCACAAAAG123GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0040L24f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040L24f, mRNA sequence.
BG447142.1:123-142
AGAGAGCTGAGAGCAAAGGCATCACAAAAG123GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Eb0040P14f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040P14f, mRNA sequence.
BG447190.1:123-142
AGAGAGCTGAGAGCAAAGGCATCACAAAAG123GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGATTTTC
GA__Ea0023O09r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0023O09r, mRNA sequence.
BM359808.1:200-219
AGAGAGCTGAGAGCAAAGGCATCACAAAAG200GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Ea0034H04r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0034H04r, mRNA sequence.
BM360736.1:237-256
AGAGAGCTGAGAGCAAAGGCATCACAAAAG237GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Ed0088D05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0088D05f, mRNA sequence.
BQ405907.1:246-265
AGAGAGCTGAGAGCAAAGGCATCACAAAAG246GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Ed0101E08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0101E08f, mRNA sequence.
BQ406987.1:155-174
AGAGAGCTGAGAGCAAAGGCATCACAAAAG155GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GA__Ed0036H06f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036H06f, mRNA sequence.
BQ411131.1:234-253
AGAGAGCTGAGAGCAAAGGCATCACAAAAG234GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GR__Ea18D03.r GR__Ea Gossypium raimondii cDNA clone GR__Ea18D03 3', mRNA sequence.
CO095515.1:250-269
AGAGAGCTGAGAGCAAAGGCATCACAAAAG250GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
GR__Ea18D04.r GR__Ea Gossypium raimondii cDNA clone GR__Ea18D04 3', mRNA sequence.
CO095517.1:249-268
AGAGAGCTGAGAGCAAAGGCATCACAAAAG249GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
G.hir-15-20 DAA bolls drought stressed 779 15-20 DAA bolls from drought stressed plants Gossypium hirsutum cDNA, mRNA sequence.
DN801624.1:181-200
AGAGAGCTGAGAGCAAAGGCATCACAAAAG181GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
CM036C03 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR455627.1:251-270
AGAGAGCTGAGAGCAAAGGCATCACAAAAG251GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
GH_ON14A11.f GH_ON Gossypium hirsutum cDNA clone GH_ON14A11 5', mRNA sequence.
DT456296.1:206-225
AGAGAGCTGAGAGCAAAGGCATCACAAAAG206GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GH_ON15B11.f GH_ON Gossypium hirsutum cDNA clone GH_ON15B11 5', mRNA sequence.
DT456386.1:239-258
AGAGAGCTGAGAGCAAAGGCATCACAAAAG239GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GH_ON34D03.r GH_ON Gossypium hirsutum cDNA clone GH_ON34D03 3', mRNA sequence.
DT457197.1:251-270
AGAGAGCTGAGAGCAAAGGCATCACAAAAG251GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GH_CHX20K16.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX20K16 3', mRNA sequence.
DT467601.1:247-266
AGAGAGCTGAGAGCAAAGGCATCACAAAAG247GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GH_RTFR_10R_B12_InvR_13Sep04_094_F Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW233758.1:260-279
AGAGAGCTGAGAGCAAAGGCATCACAAAAG260GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GH_TMIRS_049_F01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW500743.1:14-33
GGCATCACAAAAG14GGATCATTTGGTGGTTCTGGTCTTACGAACAGTGGCAAGACATGAGTTTC
GH_TMIRS_049_G02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW500758.1:259-278
AGAGAGCTGAGAGCAAAGGCATCACAAAAG259GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GH_TMIRS_104_B10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW506466.1:72-91
AGAGAGCTGAGAGCAAAGGCATCACAAAAG72GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
GH_TMIRS_115_C09_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW507540.1:197-216
AGAGAGCTGAGAGCAAAGGCATCACAAAAG197GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
GH_TMIRS_228_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW519196.1:72-91
AGAGAGCTGAGAGCAAAGGCATCACAAAAG72GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
GH_TMIRS_242_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW520622.1:72-91
AGAGAGCTGAGAGCAAAGGCATCACAAAAG72GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
EST216 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 4-a3 5', mRNA sequence.
EE592614.1:228-247
AGAGAGCTGAGAGCAAAGGCATCACAAAAG228GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
UFL_508_39 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES795323.1:232-251
AGAGAGCTGAGAGCAAAGGCATCACAAAAG232GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
UFL_538_01 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES800293.1:143-162
AGAGAGCTGAGAGCAAAGGCATCACAAAAG143GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
UFL_603_79 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805615.1:232-251
AGAGAGCTGAGAGCAAAGGCATCACAAAAG232GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
UFL_161_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES814107.1:166-185
AGAGAGCTGAGAGCAAAGGCATCACAAAAG166GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
UFL_246_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES823448.1:285-304
AGAGAGCTGAGAGCAAAGGCATCACAAAAG285GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
UFL_391_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES830799.1:231-250
AGAGAGCTGAGAGCAAAGGCATCACAAAAG231GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
UFL_447_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832275.1:221-240
AGAGAGCTGAGAGCAAAGGCATCACAAAAG221GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
UFL_015_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES835975.1:238-257
AGAGAGCTGAGAGCAAAGGCATCACAAAAG238GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
UFL_016_38 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES836100.1:123-142
AGAGAGCTGAGAGCAAAGGCATCACAAAAG123GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
UFL_017_84 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES836236.1:131-150
AGAGAGCTGAGAGCAAAGGCATCACAAAAG131GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
UFL_020_77 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES836497.1:138-157
AGAGAGCTGAGAGCAAAGGCATCACAAAAG138GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:17056006-17056025
AGAGAGCTGAGAGCAAAGGCATCACAAAAG17056006GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGGTTC
Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:10548876-10548895
AGAGAGCTGAGAGCAAAGGCATCACAAAAG10548876GGATCATTTGGTGGTTCTGGTCTTAAGAAGAGTGGCAAGAAATGAGTTTC
Leucophora obtusa genome assembly, chromosome: 3.
OX465297.1:140483026-140483045
TTTGGAGGTTCTTTTGGTGGTAGCAGTGGT140483026GGATCATTTGGTGGTTCTGGTCATGGAGCTGTAGCCCAACCGTCTCGTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGATCATTTGGTGGTTCTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGATCATTTGGTGGTTCTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.045 | 2.037 | search_plus_done; http://172.18.8.135:50400/match?q=GGATCATTTGGTGGTTCTGG&k=0&no_gap=0&offset=0&limit=50
2.108 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGAACCACCAAATGATCC&k=0&no_gap=0&offset=0&limit=0
2.108 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).