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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-09 14:16:55, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GA__Ea0001C04f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0001C04f, mRNA sequence.
BE053895.2:541-560
AGAAGGAGGTCTTCACTCTACCTCANAAAT541GGCAATCGGTTGAACTAAAAATAAACAAAACTTTGTATTCTACTGTATTA
CM017B12 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR453812.1:552-571
AGAGGAAGGTCTTCACTCTACCTCAGAAAT552GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTACTGTAT
GH_TS_1-04-04_G02_LibSeq2_04Dec03_004 Stem - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW241870.1:132-151
AGAGGAAGGTCTTCACTCTACCTCAGAAAT132GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTACTGTAT
GH_TMIRS_147_D01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW510829.1:522-541
AGAGGAAGGTCTTCACTCTACCTCAGAAAT522GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTACTGTAT
UFL_611_24 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES804210.1:519-538
AGAGGAAGGTCTTCACTCTACCTCAGAAAT519GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTACTGTAT
EST009661 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 43-J17 5', mRNA sequence.
GR716461.1:658-677
AGAGGAAGGTCTTCACTCTACCTCAGAAAT658GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTACTGTAT
A12-GC5665 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805046.1:609-628
AGAGGAAGGTCTTCACTCTACCTCAGAAAT609GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTACTGTAT
Gossypium herbaceum isolate Zhongcao1 chromosome 3.
CP106685.1:124152566-124152585
AGAGGAAGGTCTTCACTCTACCTCAGAAAT124152566GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTACTGTAT
UNVERIFIED: Gossypium hirsutum isolate GFL139 mRNA sequence.
MW082252.1:991-1010
AGAGGAAGGTCTTCACTCTACCTCAGAAAT991GGCAATCGGTTGAACTAAAAATCAAACAAAACTCTGTATTCCTATTGTAT
Cantharis lateralis genome assembly, chromosome: 4.
OY720627.1:32521610-32521629
CTTTTTCATTTTATCGTAAGACGATTTTCT32521610GGCAATCGGTTGAACTAAAATATTAAAGAGAAAGTAAAAGTTTAAGAGTA
GA__Ed0055A02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0055A02r, mRNA sequence.
BQ412174.1:98-117
ATACAGTAGGAATACAGAGTTTTGTTTGAT98TTTTAGTTCAACCGATTGCCATTTCTGAGGTAGAGTGAAGACCTTCCTCT
GA__Ed0055B02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0055B02r, mRNA sequence.
BQ412185.1:98-117
ATACAGTAGGAATACAGAGTTTTGTTTGAT98TTTTAGTTCAACCGATTGCCATTTCTGAGGTAGAGTGAAGACCTTCCTCT
GA__Ed0074C02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0074C02r, mRNA sequence.
BQ413387.1:177-196
ATACAGTAGGAATACAGAGTTTTGTTTGAT177TTTTAGTTCAACCGATTGCCATTTCTGAGGTAGAGTGAAGACCTTCCTCT
GH_TMIRS_147_D01_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW510830.1:280-299
ATACAGTAGGAATACAGAGTTTTGTTTGAT280TTTTAGTTCAACCGATTGCCATTTCTGAGGTAGAGTGAAGACCTTCCTCT
E07_F-26_053 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX172108.1:188-207
ATACAGTAGGAATACAGAGTTTTGTTTGAT188TTTTAGTTCAACCGATTGCCATTTCTGAGGTAGAGTGAAGACCTTCCTCT
BC_004_82 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY197498.1:188-207
ATACAGTAGGAATACAGAGTTTTGTTTGAT188TTTTAGTTCAACCGATTGCCATTTCTGAGGTAGAGTGAAGACCTTCCTCT
Gossypium herbaceum isolate GPA1alz chromosome 3.
CP106697.1:9123409-9123428
ATACAGTAGGAATACAGAGTTTTGTTTGAT9123409TTTTAGTTCAACCGATTGCCATTTCTGAGGTAGAGTGAAGACCTTCCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCAATCGGTTGAACTAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCAATCGGTTGAACTAAAA | format : html | download : | debug : 

0.012 | 0.012 | search_start;
0.481 | 0.469 | search_plus_done; http://172.18.8.135:50800/match?q=GGCAATCGGTTGAACTAAAA&k=0&no_gap=0&offset=0&limit=50
0.716 | 0.235 | search_minus_done; http://172.18.8.135:50800/match?q=TTTTAGTTCAACCGATTGCC&k=0&no_gap=0&offset=0&limit=40
0.721 | 0.005 | cgi_end;

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