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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 08:34:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

JKBNM5_T7_013_F05_30JUN2004_037 JKBNM5 Brassica napus cDNA 3', mRNA sequence.
ES271934.1:69-89
ATAAGATAAATATAATTAATTATACCCAGT69GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
0106956 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV225030.1:36-56
ATTCATAGATAATATATTAATTCACCCAGT36GGCGTTTACACGACGAATGATGCTCAACAAACAGCTCCCCAAAACAAAAAC
RR1AN85JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV530969.1:67-87
ATAAGATAAATATAATTAATTATACCCAGT67GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RR1AU67JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EV531442.1:67-87
ATAAGATAAATATAATTAATTATACCCAGT67GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RS2BD40JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730525.1:28-48
AGATAAATATAGTTAATTATACCCAGT28GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
BR049191 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-01E10 5', mRNA sequence.
EX064547.1:30-50
TAAGATAAATATAATTAATTATACCCAGT30GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
BR049336 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-04A09 5', mRNA sequence.
EX064692.1:26-46
ATAAATATAATTAATTATACCCAGT26GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
BR049563 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-08C03 5', mRNA sequence.
EX064919.1:100-120
ATAAGATAAATATAATTAATTATACCCAGT100GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
BR050337 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-21B03 5', mRNA sequence.
EX065693.1:12-32
TTATACCCAGT12GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
RR1BZ07JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX751536.1:118-138
ATAAGATAAATATAATTAATTATACCCAGT118GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RR4C767JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX775816.1:84-104
ATAAGATAAATATAATTAATTATACCCAGT84GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RR1DS06JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY895017.1:98-118
ATAAGATAAATATAATTAATTATACCCAGT98GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RR3EC09JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY912535.1:112-132
ATAAGATAAATATAATTAATTATACCCAGT112GGCGTTTACACGACGAATGATGATCAACAAACAACTCCCCGAAATAAAAAC
RR4DY34JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY919798.1:112-132
ATAAGATAAATATAATTAATTATACCCAGT112GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RR1FL19JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD531284.1:52-72
ATAAGATAAATATAATTAATTATACCCAGT52GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RR3FM06JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD547415.1:108-128
ATAAGATAAATATAGTTAATTATACCCAGT108GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RR4FA31JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD554484.1:48-68
TTGAGATAAATATAATTAATTATACCCAGT48GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RS1EY52JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD566275.1:70-90
ATAAGATAAATATAGTTAATTATACCCAGT70GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RS1H250JQB RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD937173.1:138-158
ATAAGATAAATATAGTTAATTATACCCAGT138GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RS2HI34JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD945688.1:109-129
ATAAGATAAATATAGTTAATTATACCCAGT109GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
RS3GC47JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD951740.1:43-63
TTAGGATAAATATAGTTAATTATACCCAGT43GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
BNAPO3GH_T3_019_D03_13JULY2007_025 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR457415.1:29-49
CATAAGATAAATATTAATTATACCCAGT29GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAATAAAATC
BNAPO4GH_T3_015_F12_20JULY2007_086 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR459950.1:32-52
ATAAGATAAATATAATTAATTATACCCAGT32GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:5347179-5347199
ATAAGATAAATATAATTAATTATACCCAGT5347179GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
Brassica napus genome assembly, chromosome: A06.
HG994360.1:4243233-4243253
ATAAGATAAATATAATTAATTATACCCAGT4243233GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
Brassica napus genome assembly, chromosome: C05.
HG994369.1:4633598-4633618
TACATAAGATAAATATTAATTATACCCAGT4633598GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAATAAAATC
Brassica rapa genome, scaffold: A06.
LR031569.1:4271948-4271968
ATAAGATAAATATAATTAATTATACCCAGT4271948GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:4503606-4503626
TACATAAGATAAATATTAATTATACCCAGT4503606GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAATAAAATC
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:26953312-26953332
ATAAGATAAATATAGTTAATTATACCCAGT26953312GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCGAAATAAAAAC
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:4375693-4375713
ATAAGATAAATATAATTAATTATACCCAGT4375693GGCGTTTACACGACGAATGATGATCAACAAACAGCTCCCCAAAACAAAAAC
12JKBNM1_UP_002_G03_19NOV2003_019 12JKBNM1 Brassica napus cDNA 5', mRNA sequence.
CN727841.1:703-723
TTTTTGTTTTGGGGGAGCTGTTTGTTGATC703ATCATTCGTCGTGTAAACGCCACTGGG
91-E022898-021-017-E23-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022E2317Q, mRNA sequence.
CX187987.1:685-705
GATTTTATTTTGGGGAGCTGTTTGTTGATC685ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGT
Brassica oleracea var. viridis mRNA, clone: KALE-057I08, 3' end sequence.
DK537132.1:695-715
GATTTTATTTTGGGGAGCTGTTTGTTGATC695ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
63JKCOT5_T3_001_H02_04JAN2005_002 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY017330.1:701-721
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC701ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
63JKCOT5_T3_011_F04_24JAN2005_022 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY018175.1:681-701
GTTTTTGTTTTGCGGAGCTGTTTGTTGATC681ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
63JKCOT5_T3_018_C09_22JAN2005_075 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY021411.1:575-595
GATTTTATTTTGGGGAGCTGTTTGTTGATC575ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
63JKCOT5_T3_038_G03_25JAN2005_019 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY023233.1:701-721
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC701ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTT
BNZDA_T7_009_F05_29MAY2003_019 Brassica napus - BNZDA Brassica napus cDNA 5', mRNA sequence.
EE569485.1:180-200
GATTTTATTTTGGGGAGCTGTTTGTTGATC180ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
69JKME5D_T3_030_B06_28MAR2005_046 69JKME5D Brassica napus cDNA 5', mRNA sequence.
ES268598.1:622-642
GATTTTATTTTGGGGAGCTGTTTGTTGATC622ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
0162876 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV130763.1:170-190
GATTTTATTTTGGGGAGCTGTTTGTTGATC170ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
RR1AU67TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV527124.1:686-706
GTTTTTATTTCGGGGAGCTGTTTGTTGATC686ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RR2AN17TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV536801.1:677-697
GTTTTTATTTCGGGGAGCTGTTTGTTGATC677ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTAATCTTAT
RR3AI14TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV549165.1:686-706
GTTTTTATTTCGGGGAGCTGTTTGTTGATC686ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RR3BF31TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV552216.1:683-703
GTTTTTATTTCGGGGAGCTGTTTGTTGATC683ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTAT
RR4B696TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV569306.1:685-705
GTTTTTATTTCGGGGAGCTGTTTGTTGATC685ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
RR4BJ02TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV570409.1:685-705
GTTTTTATTTCGGGGAGCTGTTTGTTGATC685ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
BR050493 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-23F03 5', mRNA sequence.
EX065849.1:540-560
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC540ATCATTCGTCGTGTAAACGCCAC
BR051293 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-34A12 5', mRNA sequence.
EX066649.1:543-563
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC543ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTA
BR051497 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-36F06 5', mRNA sequence.
EX066853.1:543-563
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC543ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTA
BR052126 pollen cDNA library KBPL Brassica rapa subsp. pekinensis cDNA clone KBPL-45A08 5', mRNA sequence.
EX067482.1:410-430
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC410ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086J10, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC172864.2:14028-14048
GTTTTTGTTTTGGGGAGCTGTTTGTTGATC14028ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATTATATTTATCTTAT
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:54682842-54682862
GATTTTATTTTGGGGAGCTGTTTGTTGATC54682842ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAATATTTATCTTATGTA
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:31851597-31851617
GTTTTTATTTCGGGGAGCTGTTTGTTGATC31851597ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTATCTTAT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:4428096-4428116
GTTTTTATTTCGGGGAGCTGTTTGTTGATC4428096ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTATCTTAT
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:5730065-5730085
GTTTTTATTTCGGGGAGCTGTTTGTTGATC5730065ATCATTCGTCGTGTAAACGCCACTGGGTATAATTAACTATATTTATCTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGCGTTTACACGACGAATGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGCGTTTACACGACGAATGAT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.975 | 1.966 | search_plus_done; http://172.18.8.135:50400/match?q=GGCGTTTACACGACGAATGAT&k=0&no_gap=0&offset=0&limit=50
2.925 | 0.950 | search_minus_done; http://172.18.8.135:50400/match?q=ATCATTCGTCGTGTAAACGCC&k=0&no_gap=0&offset=0&limit=20
2.941 | 0.016 | cgi_end;

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