GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 00:47:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:287891872-287891891

CCCCTCTAGCTAGAAACTTGAACTCTGCCT287891872GGGACCTCAATGCTTCAAAAAATGACTTTTCAGCAGATCTTGCCTAGGAC

Atr02b_33_G02_C011.b1 FGP Female Amborella trichopoda Amborella trichopoda cDNA clone 122D8B_M03 3', mRNA sequence.
FD436370.1:80-99

ACAAAGGATCGCCAGATGATGGTCTTTCAA80GGGACCTCAATGCTTCAAAAAGCTGTTCTTAAGTGCCGTGTTTTACGGCG

Ajuga chamaepitys genome assembly, chromosome: 5.
OY282499.1:63452227-63452246

GAGATCCTTGAGAACAGTCGAAGCCCCTAC63452227TTTTGAAGCATTGAGGTCCCCGCTGGAAGCAGCATCTATTAAGGTTTCGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.175 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=GGGACCTCAATGCTTCAAAA&k=0&no_gap=0&offset=0&limit=50
0.190 | 0.016 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTGAAGCATTGAGGTCCC&k=0&no_gap=0&offset=0&limit=48
0.191 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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