GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-05 20:22:50, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus genomic DNA, chromosome 4, clone: LjT04D06, TM0692.
AP007520.2:62705-62724
ACCCCCCTCAGCTTCAACCCATCTTGGCTA62705GGGATTTGTTAGGCTTGTAGTCTTTTCTGTTTTGTTTTTAATTTTCCGAT
Lotus japonicus genomic DNA, chromosome 3, clone: LjT40L13, TM0110a.
AP006071.1:71181-71200
CACCTCAAGAGCTTTCTCTCATTTTGGCTA71181GGGATTTGTTAGGCTTGTAGTTTTTCTTTTGTTGATTTTAATTTTCCGAT
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:8142903-8142922
ACCCCCCTCAGCTTCAACCCATCTTGGCTA8142903GGGATTTGTTAGGCTTGTAGTCTTTTCTGTTTTGTTTTTAATTTTCCGAT
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:25112557-25112576
CACCTCAAGAGCTTTCTCTCATTTTGGCTA25112557GGGATTTGTTAGGCTTGTAGTTTTTCTTTTGTTGATTTTAATTTTCCGAT
Solanum nigrum genome assembly, chromosome: 29.
OZ176040.1:29264407-29264426
GCTCAACTTTATTTGGTCAAAAATCTCAAA29264407GGGATTTGTTAGGCTTGTAGAGTAGGCTTAGGGAAGGTTAGGAAATCATT
Solanum nigrum genome assembly, chromosome: 1.
OZ176012.1:47395093-47395112
AATGATCTCCTAACCTTCCCTAAGCCTACT47395093CTACAAGCCTAACAAATCCCTTTAAGATTTTTGACCAAATGAAGTGGAGC
Solanum nigrum genome assembly, chromosome: 1.
OZ176012.1:75646096-75646115
AATGATTTCCTAACCTTCCCTAAACCTACA75646096CTACAAGCCTAACAAATCCCTTTGAGATTTTTGACCAATTGAAGTTGATT
Solanum nigrum genome assembly, chromosome: 11.
OZ176022.1:61588808-61588827
TATGATATCCTAACCTTTCCTAAGTCTACT61588808CTACAAGCCTAACAAATCCCTTTGAGATTTTTGACCAAACGAAATTGAGC
Solanum nigrum genome assembly, chromosome: 11.
OZ176022.1:62849000-62849019
TATGATATCCTAACCTTTCCTAAGTCTACT62849000CTACAAGCCTAACAAATCCCTTTGAGATTTTTGACCAAACGAAATTGAGC
Solanum nigrum genome assembly, chromosome: 26.
OZ176037.1:28017182-28017201
AATGATTTCCTAACATTCCCTAAGCCTACT28017182CTACAAGCCTAACAAATCCCTTTGAGATTTTTGACTAAATGAAATTGAGA
Solanum nigrum genome assembly, chromosome: 29.
OZ176040.1:67258243-67258262
AATGATTTCCTAACCATCCCTAAACCTACT67258243CTACAAGCCTAACAAATCCCTTTGAGATTTTTGATTAAATGAAGTTGAGC
Solanum nigrum genome assembly, chromosome: 32.
OZ176043.1:33836157-33836176
AATTATTTCCTAACCTTCCCTAAGCCTACT33836157CTACAAGCCTAACAAATCCCTTTGAGATTTTTGACCAAATGAAGTTGAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGATTTGTTAGGCTTGTAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGATTTGTTAGGCTTGTAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.486 | 1.477 | search_plus_done; http://172.18.8.135:50800/match?q=GGGATTTGTTAGGCTTGTAG&k=0&no_gap=0&offset=0&limit=50
1.714 | 0.228 | search_minus_done; http://172.18.8.135:50800/match?q=CTACAAGCCTAACAAATCCC&k=0&no_gap=0&offset=0&limit=45
1.719 | 0.005 | cgi_end;

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