GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 06:59:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

SRN_T3_099_C10_27MAY2005_076.1 SRN (roots from Solanum tuberosum Shepody fertilized with nitrogen) Solanum tuberosum cDNA clone SRN_T3_099_C10_27MAY2005_076 5', mRNA sequence.
JG565154.1:967-986
GGGGGCTAGAGAAAAGTCTTTCTTTGGGCA967GGGTGGAAAAATTCTGCTCCTTCAAATATTGGATCTTTTATTTTTTATTT
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:248047961-248047980
GAGAGAGAGATCTAGAAAGGTCTTTGGGCA248047961GGGTGGAAAAATTCTGCTCCTTCAAATATGTCTCTTATTTTTTATTTTTT
Tricholoma bakamatsutake strain SF-Tf05 chromosome 9.
CP114865.1:8717704-8717723
GGCAACTAGAGCATACTGTTCACTCATTGT8717704GGGTGGAAAAATTCTGCTCCTCTGCCTCTTCTTCTTTAATCTCCTCTTTC
KS16034A12 KS16 Capsicum annuum cDNA, mRNA sequence.
GD072597.1:147-166
AAAAAATAAAAAATAAGAGACATATTTGAA147GGAGCAGAATTTTTCCACCCTGCCCAAAGACCTTTCTAGATCTCTCTCTC
KS17027F12 KS17 Capsicum annuum cDNA, mRNA sequence.
GD078047.1:149-168
AAAATAAAAAATAAGAGACAAATATTTGAA149GGAGCAGAATTTTTCCACCCTGCCCAAAGACCTTTCTAGCTCTCTCTCTC
KS20002G12 KS20 Capsicum annuum cDNA, mRNA sequence.
GD093533.1:144-163
AAAATAAAAAATAAGAGACAAATATTTGAA144GGAGCAGAATTTTTCCACCCTGCCCAAAGACCTTTCTAGCTCTCTCTCTC
KS24033F02 KS24 Capsicum annuum cDNA, mRNA sequence.
GD120967.1:167-186
AAAATAAAAAATAAGAGACAAATATTTGAA167GGAGCAGAATTTTTCCACCCTGCCCAAAGACCTTTCTAGCTCTCTCTCTC
TSA: Capsicum annuum MGMT_Contig38077 mRNA sequence.
JW088321.1:159-178
CAGAAGTAAAAAATAAGAGACATATTTGAA159GGAGCAGAATTTTTCCACCCTGCCCAAAGACCTTTCTAGATCTCTCTCTC
Tricholoma bakamatsutake strain SF-Tf05 chromosome 3.
CP114859.1:3312962-3312981
GAAAGAGGAGATTAAAGAGGAAGAGGCAGA3312962GGAGCAGAATTTTTCCACCCATGATGAGTGAACAGTATGCCATTGTTGCC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:5500905-5500924
AAAATAAAAAATAAGAGACAAATATTTGAA5500905GGAGCAGAATTTTTCCACCCTGCCCAAAGACCTTTCTAGCTCTCTCTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGTGGAAAAATTCTGCTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGTGGAAAAATTCTGCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.222 | 0.213 | search_plus_done; http://172.18.8.135:50400/match?q=GGGTGGAAAAATTCTGCTCC&k=0&no_gap=0&offset=0&limit=50
0.570 | 0.348 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGCAGAATTTTTCCACCC&k=0&no_gap=0&offset=0&limit=47
0.575 | 0.005 | cgi_end;

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