GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:32:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 12.
OY720336.1:4992808-4992829
CTACATATATTGTTTATGAATTGGAATTCT4992808GGGTTGTGCTTTGATTTGTATGAGAAAAACAGAATCAGCCCAATTTAATTAA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:4901096-4901117
TCTACATTATTGTTTATGAATTGGAATTCT4901096GGGTTGTGCTTTGATTTGTATGAGAAAAACAGAATCAGCCCAATTTAATTAA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:3797033-3797054
CTACATATATTGTTTACGAATTGGAATTCT3797033GGGTTGTGCTTTGATTTGTATGAGAAAAACAGAATCAGCCCAATTTAATTAA
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:3826781-3826802
CTACATATATTGTTTACGAATTGGAATTCT3826781GGGTTGTGCTTTGATTTGTATGAGAAAAACAGAATCAGCCCAATTTAATTAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:39484036-39484057
TTAATTAAATTGGGCTGATTCTGTTTTTCT39484036CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:39512657-39512678
TTAATTAAATTGGGCTGATTCTGTTTTTCT39512657CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:28990701-28990722
TTAATTAAATTGGGCTGATTTTGTTTTTCT28990701CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29013449-29013470
TTAATTAAATTGGGCTGATTCTGTTTTTCT29013449CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:29023991-29024012
TTAATTAAATTGGGCTGATTCTGTTTTTCT29023991CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27131156-27131177
TTAATTAAATTGGGCTGATTCTGTTTTTCT27131156CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27310633-27310654
TTAATTAAATTGGGTTGACTCTGTTTTTCT27310633CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:27350133-27350154
TTAATTAAATTGGGCTGATTCTGTTTTTCT27350133CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:28879730-28879751
TTAATTAAATTGGGCTGATTCTGTTTTTCT28879730CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:28939448-28939469
TTAATTAAATTGGGCTGATTCTGTTTTTCT28939448CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:28996538-28996559
TTAATTAAATTGGGCTGATTCTGTTTTTCT28996538CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:28600739-28600760
TTAATTAAATTGGGCTGATTTTGTTTTTCT28600739CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:28642057-28642078
TTAATTAAATTGGGCTGATTCTGTTTTTCT28642057CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:27391854-27391875
TTAATTAAATTGGGCTGATTCTGTTTTTCT27391854CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25309056-25309077
TTAATTAAATTGGGCTGATTCTGTTTTTCT25309056CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:25373445-25373466
TTAATTAAGTTGGGCTGATTCTGTTTTTCT25373445CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU696677.1:25318160-25318181
TTAATTAAATTGGGCTGATTCTGTTTTTCT25318160CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29101723-29101744
TTAATTAAATTGAGCTGATTCTGTTTTTCT29101723CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29143028-29143049
TTAATTAAATTGGGCTGATTCTGTTTTTCT29143028CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744542.1:29153422-29153443
TTAATTAAATTGGGCTGATTCTGTTTTTCT29153422CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744953.1:28504984-28505005
TTAATTAAATTGGGCTGATTTTGTTTTTCT28504984CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744953.1:28546302-28546323
TTAATTAAATTGGGCTGATTCTGTTTTTCT28546302CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744991.1:25575284-25575305
TTAATTAAATTGAGCTGATTCTGTTTTTCT25575284CATACAAATCAAAGCACAACCCAGATTTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744991.1:25616592-25616613
TTAATTAAATTGGGCTGATTCTGTTTTTCT25616592CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG
Malus domestica genome assembly, chromosome: 1.
OU744991.1:25626986-25627007
TTAATTAAATTGGGCTGATTCTGTTTTTCT25626986CATACAAATCAAAGCACAACCCAGAATTCCAATTCATAAACAATATATGTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGGTTGTGCTTTGATTTGTATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGTTGTGCTTTGATTTGTATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.121 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=GGGTTGTGCTTTGATTTGTATG&k=0&no_gap=0&offset=0&limit=50
0.161 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=CATACAAATCAAAGCACAACCC&k=0&no_gap=0&offset=0&limit=46
0.178 | 0.016 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).