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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-11 09:10:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Ziziphus jujuba cultivar Dongzao chromosome 5.
CP134455.1:29682332-29682354
AGTGAACTGGTGGAGGCGGAGACTTATAGT29682332GGTAAGGTTTCTTGGGTGGAGATGGGTAGTGGACTGGAGGAGGAGGAGACTTG
Ziziphus jujuba cultivar Dongzao chromosome 5.
CP134455.1:29682542-29682564
AGTGAACTGGAGGAGGAGGAGACTTGTAGT29682542GGTAAGGTTTCTTGGGTGGAGATGGGTAGTGAACTGGAGGAGGAGGAGACTTG
Ziziphus jujuba cultivar Dongzao chromosome 5.
CP134455.1:29682677-29682699
AATGAACTGGAGGAGGAGGAGACTTGTAGT29682677GGTAAGGTTTCTTGGGTGGAGATGGGTAGTGAACTGGAGGAGGAGGAGACTTG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:6218338-6218360
CTGGAGGGGGTGGTGGGGGAGACTTGTAGT6218338GGTAAGGTTTCTTGGGTGGAGATGGTGTGGGAACTGGAGGAGGTGGTGGTGGT
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:6235260-6235282
CTGGAGGGGGTGGTGGGGGAGACGTGTAGT6235260GGTAAGGTTTCTTGGGTGGAGATGGTGTGGGAACTGGAGGAGGTGGTGGTGGT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:3293396-3293418
TTGGAGGGGGTGGTGGGGGAGACTTGTAGC3293396GGTAAGGTTTCTTGGGTGGAGATGGTGTGGGAACTGGAGGAGGTGGCGGTGGT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:28598588-28598610
CTGGAGGGGGTGGTGGGGGAGACTTGTAGT28598588GGTAAGGTTTCTTGGGTGGAGATGGTGTAGGAACTGGAGGAGGTGGTGGTGGT
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH060_01554m, 5' end sequence.
AB450732.1:8-30
CCACACC8ATCTCCACCCAAGAAACCTTACCACTACAAGTCTNGCCCCACCACCCCCTCCA
000817AAFA001010HT (AAFA) Royal Gala apple skin peel, tree-ripened fruit 150 DAFB Malus domestica cDNA clone AAFA001010, mRNA sequence.
CN848821.1:8-30
CCACACC8ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
000817AAFA001011HT (AAFA) Royal Gala apple skin peel, tree-ripened fruit 150 DAFB Malus domestica cDNA clone AAFA001011, mRNA sequence.
CN848822.1:8-30
CCACACC8ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
010512AAWA001462HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA001462, mRNA sequence.
CN887219.1:41-63
ACCACCACCACCTCCTCCAGTTCCCACACC41ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
010603AAWA005534HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA005534, mRNA sequence.
CN888159.1:254-276
ACCACCACCACCTCCTGCAGTTCCCACACC254ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
010604AAWA003797HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA003797, mRNA sequence.
CN888444.1:79-101
ACCACCACCACCTCCTCCAGTTCCCACACC79ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
010604AAWA005046HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA005046, mRNA sequence.
CN888966.1:79-101
ACCACCACCACCTCCTCCAGTTCCCACACC79ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
010614AAWA007931HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA007931, mRNA sequence.
CN889845.1:114-136
ACCACCACCACCTTCTCCAGTTCCCACACC114ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
010617AAWA008710HT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWA008710, mRNA sequence.
CN890014.1:154-176
ACCACCACCACCTCCTCCAGTTCCCACACC154ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
030124ABLC006073HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC006073, mRNA sequence.
CN910195.1:435-457
ACCACCACCACCTCCTCCAGTTCCCACACC435ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
030221ABLC006884HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC006884, mRNA sequence.
CN910844.1:205-227
ACCACCACCACCTCCTCCAGTTCCCACACC205ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
030109ABNB001524HT (ABNB) Braeburn cultured fruit cells, boron exposed, phytoremediation Malus domestica cDNA clone ABNB001524, mRNA sequence.
CN914498.1:554-576
ACCACCACCACCTCCTCCAGTTACCACACC554ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
030210ABPB005946HT (ABPB) M9 root tips Malus domestica cDNA clone ABPB005946, mRNA sequence.
CN919176.1:75-97
ACCACCACCACCTCCTCCAGTTCCCACACC75ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Mdfw2048j16.y1 Mdfw Malus domestica cDNA clone Mdfw2048j16 5', mRNA sequence.
CN993815.1:37-59
ATGCCGTTCACCTCCTCCAGTTCCCACACC37ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Mdfw2065g22.y3 Mdfw Malus domestica cDNA clone Mdfw2065g22 5' similar to TR:Q40768 Q40768 EXTENSIN PRECURSOR, mRNA sequence.
CO414769.1:208-230
ACCACCACCACCTCCTCCAGTTCCCACACC208ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Mdfr3006i11.y3 Mdfr Malus domestica cDNA clone Mdfr3006i11 5', mRNA sequence.
CO415253.1:26-48
CACCACCTCCTCCAGTTCCCACACC26ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Mdfrt3040e13.y3 Mdfrt Malus domestica cDNA clone Mdfrt3040e13 5' similar to TR:Q9V602 Q9V602 CG10897 PROTEIN, mRNA sequence.
CO868072.1:140-162
ACCACCACCACCTCCTCCAGTTCCCACACC140ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
SD3MrG6 YG/PR Prunus cerasus cDNA, mRNA sequence.
EE487998.1:147-169
CCCATACCACTACAAGTCTCCACCACCACC147ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCACACCAG
sd11E11 YG/PR Prunus cerasus cDNA, mRNA sequence.
EE488456.1:497-519
CCCATACCACTACAAGTCTCCACCACCACC497ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCACACCAG
sd11F7 YG/PR Prunus cerasus cDNA, mRNA sequence.
EE488464.1:376-398
CCCATACCACTACAAGTCTCCACCACCACC376ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCACACCAG
sd14_E01.m13r YG/PR Prunus cerasus cDNA, mRNA sequence.
EE488706.1:152-174
CCCATACCACTACAAGTCTCCACCACCACC152ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCACACCAG
sd14_F07.m13r YG/PR Prunus cerasus cDNA, mRNA sequence.
EE488722.1:152-174
CCCATGCGACTACAAGTCTCCACCACCACC152ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCACACCAG
sd15_C12.m13r YG/PR Prunus cerasus cDNA, mRNA sequence.
EE488777.1:321-343
CCCATACCACTACAAGTCTCCACCACCACC321ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCACACCAG
Mdfrs3136C06.g1 Apple_EST_Mdfrs Malus domestica cDNA 5', mRNA sequence.
GO518368.1:109-131
ACCACCACCACCTCCTCCAGTTCCCACACC109ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Mdfrs3141O18.g1 Apple_EST_Mdfrs Malus domestica cDNA 5', mRNA sequence.
GO519732.1:191-213
ACCACCACCACCTCCTCCAGTTCCCACACC191ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Mdfrs3142C09.g1 Apple_EST_Mdfrs Malus domestica cDNA 5', mRNA sequence.
GO519811.1:83-105
ACACCCACCACCTCCTCCAGTTCCCACACC83ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Pyrus pyrifolia mRNA, clone: NFW1_07_81, 5' end sequence, expressed in flower bud.
HX761712.1:271-293
ACCACCTCCACCTCCTCCAGTTCCCACACC271ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Pyrus pyrifolia mRNA, clone: NFW2_05_54, 5' end sequence, expressed in flower bud.
HX762442.1:19-41
TCCTCNAGTTCCCACACC19ATCTCCACCCAAGAAACCTTACCACTACAAGNNNNNNNNCACCACCCCCTCCA
ZjEST332 Ziziphus jujuba Fruit-bearing Shoot Library Ziziphus jujuba cDNA, mRNA sequence.
JZ510842.1:261-283
CAAGTCTCCTCCTCCTCCAGTTCACTACCC261ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCTCCTCCTCCAGTTCATT
ZjEST332 Ziziphus jujuba Fruit-bearing Shoot Library Ziziphus jujuba cDNA, mRNA sequence.
JZ510842.1:396-418
CAAGTCTCCTCCTCCTCCAGTTCACTACCC396ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCTCCTCCTCCAGTTCACT
ZjEST332 Ziziphus jujuba Fruit-bearing Shoot Library Ziziphus jujuba cDNA, mRNA sequence.
JZ510842.1:606-628
CAAGTCTCCTCCTCCTCCAGTCCACTACCC606ATCTCCACCCAAGAAACCTTACCACTATAAGTCTCCGCCTCCTCCAGTTCACT
TSA: Pyrus x bretschneideri Unigene1699_XinShao mRNA sequence.
JR597067.1:103-125
ACCACCTCCACCTCCTCCAGTTCCCACACC103ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
TSA: Pyrus x bretschneideri Unigene10120_XinShao mRNA sequence.
JR605179.1:103-125
ACCACCTCCACCTCCTCCAGTTCCCACACC103ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:2747410-2747432
GCCACCACCACCTCCTCCAGTTCCCACACC2747410ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:2763877-2763899
ACCACCACCACCTCCTCCAGTTCCCACACC2763877ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:2347621-2347643
ACCACCACCACCTCCTCCAGTTCCCACACC2347621ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:2364792-2364814
ACCACCACCACCTCCTCCAGTTCCCACACC2364792ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:2419218-2419240
ACCACCACCACCTCCTCCAGTTCCCACACC2419218ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:2435504-2435526
ACCACCACCACCTCCTCCAGTTCCCACACC2435504ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:2368535-2368557
ACCACCACCACCTCCTCCAGTTCCCACACC2368535ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:2384819-2384841
ACCACCACCACCTCCTCCAGTTCCCACACC2384819ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:3116058-3116080
ACCACCACCACCTCCTCCAGTTCCCACACC3116058ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:3133339-3133361
ACCACCACCACCTCCTCCAGTTCCCACACC3133339ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:2424674-2424696
ACCACCACCACCTCCTCCAGTTCCCACACC2424674ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:2441632-2441654
ACCACCACCACCTCCTCCAGTTCCCACACC2441632ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU696686.1:2418658-2418680
ACCACCACCACCTCCTCCAGTTCCCACACC2418658ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU696686.1:2434942-2434964
ACCACCACCACCTCCTCCAGTTCCCACACC2434942ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:2569619-2569641
ACCACCACCACCTCCTCCAGTTCCCACACC2569619ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:2585903-2585925
ACCACCACCACCTCCTCCAGTTCCCACACC2585903ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU744962.1:2300654-2300676
ACCACCACCACCTCCTCCAGTTCCCACACC2300654ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU744962.1:2317668-2317690
ACCACCACCACCTCCTCCAGTTCCCACACC2317668ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU745000.1:2068388-2068410
ACCACCACCACCTCCTCCAGTTCCCACACC2068388ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus domestica genome assembly, chromosome: 10.
OU745000.1:2085352-2085374
ACCACCACCACCTCCTCCAGTTCCCACACC2085352ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:2214875-2214897
ACCACCACCACCTCCTCCAGTTCCCACACC2214875ATCTCCACCCAAGAAACCTTACCACTACACGTCTCCCCCACCACCCCCTCCAG
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:2231675-2231697
ACCACCACCACCTCCTCCAGTTCCCACACC2231675ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:3387190-3387212
ACAAGTCTCCACCACCACCACTTCCACACC3387190ATCTCCACCCAAGAAACCTTACCACTACAAATCTCCCTCACCACCCATCCAGT
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:3405703-3405725
ACCACCACCACCTCCTCCAGTTCCCACACC3405703ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:1555122-1555144
ACCACCTCCACCTCCTCCAGTTCCCACACC1555122ATCTCCACCCAAGAAACCTTACCACTACAAGTCTCCCCCACCACCCCCTCCAG
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:1574025-1574047
ACCACCACCACCTCCTCCAGTTCCCACACC1574025ATCTCCACCCAAGAAACCTTACCACTACAAATCTCCCCCACCACCCCCTCCAG

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