GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:44:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:8996617-8996636
TATACCTTCAGTTGCCGGCCTTTCCTCTCG8996617GGTAGGGTCGGTAGCAACCTCATCTCCTCCTTCCTTTTTCTCTTTCTCCT
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:8638438-8638457
TATACCTTCAGTTGCCGGCCTTTCCTCTCG8638438GGTAGGGTCGGTAGCAACCTCATTTCCTCCTTCCTTTTTCTCTTTCTCCT
Malus baccata partial hdg11 gene for putative homeobox-leucine zipper protein HDG11-like, exons 1-2.
LM999991.1:555-574
TATACCTTCAGTTGCCGGCCTTTCCTCTCG555GGTAGGGTCGGTAGCAACCT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:23773310-23773329
AGGAGAAAGAGAAAAAGGAAGGAGGAAATG23773310AGGTTGCTACCGACCCTACCCGAGAGGAAAGGCCGGCAACTGAAGGTATA
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:23469590-23469609
AGGAGAAAGAGAAAAAGGAAGGAGGAGATG23469590AGGTTGCTACCGACCCTACCCGAGAGGAAAGGCCGGCAACTGAAGGTATA
Malus domestica genome assembly, chromosome: 12.
OU696688.1:23131847-23131866
AGGAGAAAGAGAAAAAGGAAGGAGGAGATG23131847AGGTTGCTACCGACCCTACCCGAGAGGAAAGGCCGGCAACTGAAGGTATA
Malus domestica genome assembly, chromosome: 12.
OU745002.1:22759761-22759780
AGGAGAAAGAGAAAAAGGAAGGAGGAGATG22759761AGGTTGCTACCGACCCTACCCGAGAGGAAAGGCCGGCAACTGAAGGTATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTAGGGTCGGTAGCAACCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTAGGGTCGGTAGCAACCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.100 | 0.092 | search_plus_done; http://172.18.8.135:50400/match?q=GGTAGGGTCGGTAGCAACCT&k=0&no_gap=0&offset=0&limit=50
0.118 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=AGGTTGCTACCGACCCTACC&k=0&no_gap=0&offset=0&limit=47
0.121 | 0.003 | cgi_end;

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