GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 23:07:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Christensenellaceae bacterium isolate c84a42d1-d9c9-443e-85ff-73520b584de8 genome assembly, chromosome: 1.
OY776633.1:572978-572997
CCGTGCCGGGCGGGCAGGCCGTGTCCAGCA572978GGTATTTTCTGTTGATGATGCGCCGCTCGTAGTTGCAGTTCACGGTTTCA
NXSI_141_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_141_A04 5' similar to Arabidopsis thaliana sequence At3g13050 putative transporter see http://mips.gsf.de/proj/thal/db/in
BG275375.1:261-280
GCACGATTTAGCGATGGAAAATGGCGGTCA261GGTATTTTCTGTTGATGATGCACTTTTGGCTGTGGGATTTGGGAAATTCC
GQ03206.B7_F15 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03206_F15 5', mRNA sequence.
EX362769.1:105-124
TCACGATTTAGCGATGGAAAATGGTGGTCA105GGTATTTTCTGTTGATGATGCACTGTTGGCTGTGGGCTTCGGGAAATTCC
GQ03207.B7_M18 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03207_M18 5', mRNA sequence.
EX363648.1:100-119
TCACGATTTAGCGATGGAAAATGGTGGTCA100GGTATTTTCTGTTGATGATGCTCTGTTGGCTGTGGGCTTCGGGAAATTCC
GQ03214.B7_A13 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03214_A13 5', mRNA sequence.
EX368430.1:114-133
TCACGATTTAGCGATAGAAGATGGTGGTCA114GGTATTTTCTGTTGATGATGCTCTGTTGGCTGTGGGCTTCGGGAAATTCC
GQ03701.B7_K21 GQ037 - Shoot tip - Dormant Picea glauca cDNA clone GQ03701_K21 5', mRNA sequence.
EX415166.1:147-166
TCACGATTTAGCGATGGAAAATGGTGGTCA147GGTATTTTCTGTTGATGATGCACTGTTGGCTGTGGGCTTCGGGAAATTCC
GQ03710.B7_F18 GQ037 - Shoot tip - Dormant Picea glauca cDNA clone GQ03710_F18 5', mRNA sequence.
EX418387.1:103-122
TCACGATTTAGCGATGGAAAATGGTGGTCA103GGTATTTTCTGTTGATGATGCACTGTTGGCTGTGGGCTTCGGGAAATTCC
Picea glauca clone GQ03207_M18 mRNA sequence.
BT109383.1:100-119
TCACGATTTAGCGATGGAAAATGGTGGTCA100GGTATTTTCTGTTGATGATGCTCTGTTGGCTGTGGGCTTCGGGAAATTCC
Ilex aquifolium genome assembly, chromosome: 2.
OX637392.1:46791624-46791643
GGATGGTGTGGTGTCAAGAGGTGGTCTGAT46791624GGTATTTTCTGTTGATGATGGAGTGTCCAAAGAAGATGCTGTCGTGGGCC
Epistrophe grossulariae genome assembly, chromosome: 4.
OV839569.1:49284449-49284468
TTTGCTTATGGTACTTGTTTGTTGTGGAAG49284449GGTATTTTCTGTTGATGATGCGTTAGGATGTAGCGGGATAGGAAGTTGGT
Synanthedon myopaeformis genome assembly, chromosome: 27.
OX122940.1:4311130-4311149
AGATCTATTTGAGTTCCAACAAGAAGAAAC4311130GGTATTTTCTGTTGATGATGAGTTATTTCGGGCACCCACTGCGAAATAAA
Synanthedon formicaeformis genome assembly, chromosome: 27.
OX243980.1:5112148-5112167
AGGTCTATCTGAGTTCCAACCAGAAGAAAA5112148GGTATTTTCTGTTGATGATGCGTTATTTCGGGCACCCACTGTATTAAAAA
Agonum fuliginosum genome assembly, chromosome: 16.
OX384045.1:11379925-11379944
TGGATTTTATTTTTATATAGTATACTCAAC11379925GGTATTTTCTGTTGATGATGTCCTACTTAAAAAATTGTGATTCTATAAGC
Pungitius pungitius genome assembly, chromosome: 9.
OX438549.1:3866789-3866808
AATTCAGTGCAAACCTACACTGGATTCATC3866789CATCATCAACAGAAAATACCAAACATTTGCATTTTTTTGTTTGTTTTTTT
Brachyptera putata genome assembly, chromosome: 8.
OU015469.1:6532353-6532372
TTTAAATCCTATTGTGCAAAACAACCTCTT6532353CATCATCAACAGAAAATACCTCTAGTCTATAAGAAGAAAAGAATCTACTC
Synanthedon vespiformis genome assembly, chromosome: 27.
OU906972.1:843956-843975
TTTATTATACAGTGGGTGCCCGAAATAACG843956CATCATCAACAGAAAATACCTTTTCTTCTGGTTGGAACTCAGATAGATCT
Synanthedon tipuliformis genome assembly, chromosome: 27.
OX392434.1:823283-823302
TTTTTTTTGTAGTGGGTGCCAGAAATAACG823283CATCATCAACAGAAAATACCGTTTCTTCTGGTCGGAACTCAGATAGATCT
Dioctria linearis genome assembly, chromosome: 3.
OZ005742.1:64883253-64883272
GGTAAATATATTTTTATGTTTTCCTAAGTT64883253CATCATCAACAGAAAATACCTACAAGGTTCTTTCATATGAAATTTTTGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GGTATTTTCTGTTGATGATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTATTTTCTGTTGATGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.404 | 0.395 | search_plus_done; http://172.18.8.135:50400/match?q=GGTATTTTCTGTTGATGATG&k=0&no_gap=0&offset=0&limit=50
0.465 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=CATCATCAACAGAAAATACC&k=0&no_gap=0&offset=0&limit=37
0.469 | 0.003 | cgi_end;

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